PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676725808

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

TALE

Protein Properties

Length: 539aa MW: 60997.4 Da PI: 6.2574

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676725808	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.9	4.5e-10	374	411	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk++gL+++qV +WF N R + 676725808 374 FEHflHPYPKESEKMMLAKQTGLSKNQVANWFINARVR 411 664459******************************88 PP
2	BELL	116	1.8e-37	234	305	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kLl++++eVdkrY+qy++q+++++ssFe+vag gsakpYts+Al++iS hFr+L+d i+eqi 676725808 234 ERQELQNKKSKLLTMVDEVDKRYNQYYHQMEALASSFEIVAGFGSAKPYTSVALNRISCHFRSLRDTIKEQI 305 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.9E-51	161	303	IPR006563	POX domain
Pfam	PF07526	1.2E-46	167	301	IPR006563	POX domain
PROSITE profile	PS50071	12.552	352	415	IPR001356	Homeobox domain
SMART	SM00389	1.6E-9	355	419	IPR001356	Homeobox domain
CDD	cd00086	4.68E-11	355	416	No hit	No description
SuperFamily	SSF46689	2.87E-17	356	422	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-27	358	421	IPR009057	Homeodomain-like
Pfam	PF05920	9.3E-18	372	411	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MAVYYTSNVN CYQQEPLYLN HQQQQQQQQA SSSSAAASFV GENVRNEMVF IPPTTGRDVV 60 NGLQNLNGDV TGTSSDISFH DGQGLSLSLG NQISVPSFHY QQYQMGFNPN PSISVKETQP 120 FNVDEKSKEM LLLGQSDPSS GYAGNGGIGY YNGYRYNETS GGFMSSVLRS RYLKPAQNLL 180 DEVVSVKKEL NQMRKKKKGE DFNNGSKDTE GGGSGGGELS TDSNGKPIEL STVERQELQN 240 KKSKLLTMVD EVDKRYNQYY HQMEALASSF EIVAGFGSAK PYTSVALNRI SCHFRSLRDT 300 IKEQIQIIRE KLGEKGGESL DEQQGERIPR LRYLDQRLRQ QRALHQQLGM VRPAWRPQRG 360 LPENSVSALR AWLFEHFLHP YPKESEKMML AKQTGLSKNQ VANWFINARV RLWKPMIEEM 420 YKEEFGDESE LRISKSSQEP NSTNREDSSS QQQPEDNNNN NNLTYPSADT TNIVFSSEPK 480 PDRISGNDDG PQQQMNRSAD YDTLMNYHGY GLDDYRYIGG NNQQDSRFSN AHHLHDFVV

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MAVYYTSNVN CYQQEPLYLN HQQQQQQQQA SSSSAAASFV GENVRNEMVF IPPTTGRDVV  60
NGLQNLNGDV TGTSSDISFH DGQGLSLSLG NQISVPSFHY QQYQMGFNPN PSISVKETQP  120
FNVDEKSKEM LLLGQSDPSS GYAGNGGIGY YNGYRYNETS GGFMSSVLRS RYLKPAQNLL  180
DEVVSVKKEL NQMRKKKKGE DFNNGSKDTE GGGSGGGELS TDSNGKPIEL STVERQELQN  240
KKSKLLTMVD EVDKRYNQYY HQMEALASSF EIVAGFGSAK PYTSVALNRI SCHFRSLRDT  300
IKEQIQIIRE KLGEKGGESL DEQQGERIPR LRYLDQRLRQ QRALHQQLGM VRPAWRPQRG  360
LPENSVSALR AWLFEHFLHP YPKESEKMML AKQTGLSKNQ VANWFINARV RLWKPMIEEM  420
YKEEFGDESE LRISKSSQEP NSTNREDSSS QQQPEDNNNN NNLTYPSADT TNIVFSSEPK  480
PDRISGNDDG PQQQMNRSAD YDTLMNYHGY GLDDYRYIGG NNQQDSRFSN AHHLHDFVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-15	361	419	5	63	Homeobox protein Meis2
3k2a_B	2e-15	361	419	5	63	Homeobox protein Meis2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676725808

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352600	0.0	AK352600.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-C02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006416473.1	0.0	BEL1-like homeodomain protein 10
Refseq	XP_024008357.1	0.0	BEL1-like homeodomain protein 10
Swissprot	Q9FXG8	0.0	BLH10_ARATH; BEL1-like homeodomain protein 10
TrEMBL	A0A1J3FV78	0.0	A0A1J3FV78_NOCCA; BEL1-like homeodomain protein 10
STRING	XP_006416473.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3820	19	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19700.3	0.0	BEL1-like homeodomain 10

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]