PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676725992
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 443aa    MW: 49323.1 Da    PI: 6.7725
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676725992genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.7e-181261255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +ykGVr +k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  676725992 12 KYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAALYCLRG 61
               8*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.42E-281171No hitNo description
PfamPF008479.0E-111261IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-281270IPR001471AP2/ERF domain
SMARTSM003801.2E-291275IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-191270IPR016177DNA-binding domain
PROSITE profilePS5103221.7861269IPR001471AP2/ERF domain
PRINTSPR003671.7E-81324IPR001471AP2/ERF domain
PRINTSPR003671.7E-83551IPR001471AP2/ERF domain
PfamPF045702.1E-19363410IPR007650Zf-FLZ domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEGSSSSSSE AKYKGVRKRK WGKWVSEIRL PNSRERIWLG SYDSPEKAAR AFDAALYCLR  60
GSGAQFNFPD NPPVISGGRN MSRSEIREAA ARFANSEENV ASVGAGYEKQ QQQQQVSPSN  120
SAASSSMMMT MDIDDSEFLS MLPTVGSGNF ASDFGLFPGF DDFSDEYSGD RFMEQSSNIH  180
HQLTKEINDV NPQVFVLEVG TVDPIVNVQD VNPHMVVPGN RSIISPGRFK GSPRSPLDMR  240
FPSPGSSKRY YDNGGIGLGI VAALEKSGII KISTSKQNLV YYSDSGSNRS NPVHCARRFL  300
FSAGNDVSDE EYTCVTRHDG MTKVYYNDDE FEFRDNRSDV DRRELTSNKS TGIAEELPAK  360
KREVFRESPD FLSLCCLCKK KLQGKDIYMY KGDRGFCSKE CRSVTIMEDN VNVHKSRSVE  420
VFRSPCVGGQ ISPAGIFVLE RIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-15377580Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11319KGVRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676725992
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022543008.11e-108uncharacterized protein LOC111198585
TrEMBLA0A3P5YR621e-106A0A3P5YR62_BRACM; Uncharacterized protein
STRINGBo5g027190.11e-103(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-86ERF family protein