PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676726042
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HB-other
Protein Properties Length: 209aa    MW: 24271.3 Da    PI: 4.7521
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676726042genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-09142200155
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRake 55 
                + kR++++ +q e+L e +++n  ++ +++ ++ ++l    + + +q++ WF NrR+++
  676726042 142 KAKRWKPNLKQREILVESYNENLILDSQRKNQILAELlvhgEASIDQISRWFTNRRYRD 200
                579*****************************99999899988999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.317139203IPR001356Homeobox domain
SuperFamilySSF466891.24E-7141203IPR009057Homeodomain-like
SMARTSM003890.0021141207IPR001356Homeobox domain
PfamPF000467.5E-7142200IPR001356Homeobox domain
CDDcd000862.54E-4142203No hitNo description
Gene3DG3DSA:1.10.10.602.7E-7142204IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEKQISSWEK DLAVEESQHL LQIVMRDDVQ MMPENEIGES KHNRTGLENL NSNDDETWSE  60
EEINELLIGG YQQLPNPTHP AFDTLLSDAQ RQEIIESNKV HYAPRLLALE VKDVKVIKDL  120
DLEIDTSDTL MSHFRLGTVG EKAKRWKPNL KQREILVESY NENLILDSQR KNQILAELLV  180
HGEASIDQIS RWFTNRRYRD NKKAQPGLV
Cis-element ? help Back to Top
SourceLink
PlantRegMap676726042
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-