PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676726414
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 266aa    MW: 28915.9 Da    PI: 5.8307
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676726414genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002191113123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C + F ++  L  H++ H
  676726414  91 FSCNYCQRKFYSSQALGGHQNAH 113
                89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-687118No hitNo description
PROSITE profilePS5015711.42791118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MRPILDLEVE ASSEHDHYSD SNSSQVASNL SPVGDDYRPI SLNLSLCFNN NNNNLDLESS  60
SLTRPISSTS ESSNPEQQQQ QQQPSVSKRV FSCNYCQRKF YSSQALGGHQ NAHKRERTLA  120
KRAMRMGLAG VFPGRGSSSS YTAAATAAAL SCLPLHGSGN GNMTSFRTLG IQAHASTHDL  180
GVTRPTPETI IRNIARFNQG YFSNCVPFFV EDDDAELLWP GSFRQAAGAV AAEVGHDNLG  240
ESNVDFLEVK QAVDMESSLP DLTLKL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676726414
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453325.11e-149PREDICTED: zinc finger protein 4-like
SwissprotQ392631e-128ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A3P6AU331e-150A0A3P6AU33_BRACM; Uncharacterized protein
STRINGBra039750.1-P1e-147(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66722643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-116zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]