PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676726726
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 359aa    MW: 40516.6 Da    PI: 4.4374
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676726726genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19127176255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +++GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  676726726 127 KFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 176
                89*******.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-30126184IPR001471AP2/ERF domain
PROSITE profilePS5103223.775127184IPR001471AP2/ERF domain
SMARTSM003801.3E-38127190IPR001471AP2/ERF domain
PfamPF008474.9E-12127176IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21127185IPR016177DNA-binding domain
CDDcd000181.05E-33127183No hitNo description
PRINTSPR003672.7E-10128139IPR001471AP2/ERF domain
PRINTSPR003672.7E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDFRPLKYTE HKTSITKYTK KSPERNISGE TRHDAVRVVR VSVTDPDATD SSSDEEEEDF  60
LFPRRRVKRF VNEIKVEPGC NNNNVNIITG VSMKERKRLS DDTQSPAASS RHRPLKVSIP  120
TGQNGRKFRG VRQRPWGKWA AEIRDPEQRR RIWLGTFETA EEAAVVYDNA AIRLRGPDAL  180
TNFSIPPQTQ EEESEPEQPV IDKPESIITT TTTTTTSSSE STEDFQHLSS PTSVLNLRSS  240
EEIQQVQQPF KSAKPEPEIS DAPWWHTGFS SGSGESDDSF PLDTPFLDNY FNESPPEISI  300
FDQPMGQVFS ENDDIFNDMF LGGESMMNIG DEFTSSSIKD IGSMFSDFDD SLISDLLVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22125191370ATERF1
3gcc_A4e-22125191370ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676726726
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401723.10.0ethylene-responsive transcription factor CRF3
RefseqXP_009127181.10.0PREDICTED: ethylene-responsive transcription factor CRF3-like
SwissprotQ9FK121e-166CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLA0A398A9460.0A0A398A946_BRACM; Uncharacterized protein
STRINGBra022643.1-P0.0(Brassica rapa)
STRINGXP_006401723.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-143cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  3. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]