PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676726728
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRF
Protein Properties Length: 362aa    MW: 39855.6 Da    PI: 8.4094
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676726728genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.23.4e-24114156244
        WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 epgrCrRtDGKkWRCs++v++++k+CErHlhrgr rsrk +e
  676726728 114 LEPGRCRRTDGKKWRCSKEVVSDHKYCERHLHRGRPRSRKLVE 156
                69**************************************987 PP
2QLQ50.46.7e-186191232
        QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32
               +FT+aQl +L++Q+++yKy++a+ PvP +Ll
  676726728 61 PFTNAQLKELERQAMIYKYMIASIPVPFDLL 91
               9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.7E-106096IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.5E-116191IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.2476196IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.737113157IPR014977WRC domain
PfamPF088793.0E-20115156IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDFLKVSDKT TTPYRSDSLF GLNQQLYKES SFGYRDMEIH HPHVITPYAG NGVLGCYYYY  60
PFTNAQLKEL ERQAMIYKYM IASIPVPFDL LISSSSSSSS APTYTNVKKV PGDLEPGRCR  120
RTDGKKWRCS KEVVSDHKYC ERHLHRGRPR SRKLVELPYS RPSSTKNRDL QNDKVVEPRK  180
VSSCLSKYKE TRGIEIFPVS ASNEQENKYL NFIDIWSDGV RSSEKQSTTT TASTTPASSS  240
NGNLSLYSLD LSMGGNNLMG HNEMGLIQMG LGVIGSGGRD DDPHGYSPYG VVSSSPVDEM  300
SSWLAPTSAT PGGPLAEILR PNPSSAFSGD MESYSLTATP TPSSSPSRVV KKVTGSVSDE  360
SS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676726728
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401675.10.0growth-regulating factor 7
SwissprotQ9FJB80.0GRF7_ARATH; Growth-regulating factor 7
TrEMBLV4LTC90.0V4LTC9_EUTSA; Uncharacterized protein
STRINGXP_006401675.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121062731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.11e-156growth-regulating factor 7
Publications ? help Back to Top
  1. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]