PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676726830
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family AP2
Protein Properties Length: 332aa    MW: 37690.5 Da    PI: 6.1945
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676726830genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.6e-1246102155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  s+n  ++k+ + g ++ ++ Aa+a++ a++k++g
  676726830  46 SVYRGVTRHRWTGRYEAHLWDkNSWNEaQSKKGRQGAYDDEDAAARAYDLAALKYWG 102
                78*******************88889998888888*****99*************98 PP
2AP250.64.8e-16145196155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV  ++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  676726830 145 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDVAAIEYRG 196
                89****************99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-1546111IPR016177DNA-binding domain
PfamPF008471.0E-746102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-1247110IPR001471AP2/ERF domain
SMARTSM003801.7E-1747116IPR001471AP2/ERF domain
PROSITE profilePS5103218.92747110IPR001471AP2/ERF domain
PRINTSPR003673.2E-64859IPR001471AP2/ERF domain
CDDcd000181.68E-24145206No hitNo description
PfamPF008471.5E-11145196IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17145206IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-17146204IPR001471AP2/ERF domain
SMARTSM003809.5E-26146210IPR001471AP2/ERF domain
PROSITE profilePS5103217.965146204IPR001471AP2/ERF domain
PRINTSPR003673.2E-6186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEEMSRRSKK TSVENITGDE SSASVVPKTK RKRRSQPRDT PPQRSSVYRG VTRHRWTGRY  60
EAHLWDKNSW NEAQSKKGRQ GAYDDEDAAA RAYDLAALKY WGRDTILNFP LCNYEDDIKE  120
MESQSKEEYI GSLRRKSSGF SRGVSKYRGV AKHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAAIAYDVA AIEYRGLNAV TNFDISRYLK LPAPENPIDA ANNLLEIPHS DRSPFINPDH  240
ESEISQSPSS SDDNDDRKTK FLKSSPFSNA EELLGPLTPP EVAPSRRSFP DDIQTYFGCQ  300
DSGKLTTVED DVIFGGLDSF LTPDFYSELN DC
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676726830
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638688.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN40.0AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D3CAN80.0A0A0D3CAN8_BRAOL; Uncharacterized protein
STRINGBo5g021520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.10.0ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]