PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727078
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24262.8 Da    PI: 9.3781
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727078genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.81.4e-235098149
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               k i+++s+r+vtfskRr g++KKA ELSvL++a++avi fs+ g++y++
  676727078 50 KEIKEDSKRHVTFSKRRRGLFKKAAELSVLTGAKIAVITFSKCGRIYTF 98
               689*********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.72642102IPR002100Transcription factor, MADS-box
SMARTSM004326.7E-2542101IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-2343120IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-184464IPR002100Transcription factor, MADS-box
PfamPF003197.6E-225298IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-186479IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-1879100IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEEVRETSSM TLLTPNDQFQ NTDALVSQFK KVLTTKTPKT TRGRQKIEIK EIKEDSKRHV  60
TFSKRRRGLF KKAAELSVLT GAKIAVITFS KCGRIYTFGN VDTLISKYLR KSPVDLDVYH  120
GDDAAEEEGK PWWERPVESV PDKDLEDYVA AMSVLRDKLG KKIIEMGNID RTVPAWPINV  180
MNWTSTMDMQ SLESMTDGLT RCRLGQNDER VR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A4e-1444981872PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B4e-1444981872PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727078
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416719.21e-108MADS-box transcription factor 23
TrEMBLA0A397Y9271e-107A0A397Y927_BRACM; Uncharacterized protein
STRINGBra026674.1-P1e-107(Brassica rapa)
STRINGXP_006416719.11e-107(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.16e-89M-type_MADS family protein