PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676727140

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NF-YA

Protein Properties

Length: 332aa MW: 36634.5 Da PI: 8.5028

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676727140	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.1	5.3e-32	175	231	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQ+++I++RRq+Rakle+++kl +k+rkpylheSRh hA++RpRgsgGrF 676727140 175 NEPVFVNAKQFHAIMRRRQQRAKLEAQNKL-IKARKPYLHESRHVHAIKRPRGSGGRF 231 59**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.1E-37	173	234	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.889	174	234	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.2E-27	176	231	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.2E-23	177	199	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	179	199	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.2E-23	208	231	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MDKKDLDASS AAHMTTPPYL NTSISWGLPT EWNVCGSAVS ESLSLKVHAR SKHVSNSKKI 60 NFHDHDSSST QSTGQSSTED ACRGDDDNNP SRQISFSAES DVCGGFEETQ RKGFPNNIKS 120 GSYTTEISDI HFTPGKANFS FHHADPHFGG YLPHATVWNP QMVGRVPLPL DLIENEPVFV 180 NAKQFHAIMR RRQQRAKLEA QNKLIKARKP YLHESRHVHA IKRPRGSGGR FLNTKKLQES 240 TEPKNDMSTQ HKGTEGNMSG IVAHQLQNSK DRSCSTTSGS NITSVSDGVD IFGQSGFQLS 300 DCPYKTNPTM YVHGQSNDMH GGGNAHHFPV HI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-18	176	236	3	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676727140

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020868336.1	1e-171	nuclear transcription factor Y subunit A-8
Swissprot	Q9LNP6	1e-158	NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBL	D7KFH2	1e-168	D7KFH2_ARALL; CCAAT-binding transcription factor (CBF-B/NF-YA) family protein
STRING	fgenesh2_kg.1__1922__AT1G17590.3	1e-168	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3349	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17590.4	1e-159	nuclear factor Y, subunit A8

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Djami-Tchatchou AT,Ntushelo K Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum. Pak. J. Biol. Sci., 2017. 20(3): p. 147-153 [PMID:29023006]