PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727272
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 387aa    MW: 43384.1 Da    PI: 7.2498
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727272genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-1588132147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +W++ E+e++++a+k++G   W+ I +++g  +t+ q++s+ qk+
        676727272  88 REKWSEKEHERFLEAIKLYGRA-WRQIQEHIG-SKTAVQIRSHAQKF 132
                      789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-1482138IPR009057Homeodomain-like
PROSITE profilePS5129420.03783137IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-984134IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-1586135IPR006447Myb domain, plants
SMARTSM007172.6E-1287135IPR001005SANT/Myb domain
PfamPF002491.3E-1288131IPR001005SANT/Myb domain
CDDcd001678.44E-990133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAAPVINQLP SFAKQIDELR LVYRISDKYD SLWRIICWEE VEDPSEEVSS NVENGSCNSN  60
EGTNPETSSN SLENTVKVRK PYTVTKQREK WSEKEHERFL EAIKLYGRAW RQIQEHIGSK  120
TAVQIRSHAQ KFFSKVSRET DSGSDGSTKA VAIPPPRPKR KPTHPYPRKS PLPYSQSPSS  180
AMEKGTKSPT SVLSAFASED QLNRCSSPNS CTSDMQCIDE KNDYAASKHF FKEDDAAIAS  240
TPTSSITLFG KIVVVAGESH KTSRDNVDDH KSLTGQEDHY LGITKSTSRI DSRHVDTDLS  300
LGVWETSCTG SNAFGSVTEV SENLEKSAEP INSPWKRLTS LEKQEFCYHA NGFRPYKRCL  360
SEREVTSSLS LVASEEENNR RRARVCS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727272
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288892.11e-179protein REVEILLE 7
SwissprotB3H5A81e-170RVE7_ARATH; Protein REVEILLE 7
TrEMBLA0A3N6QIK30.0A0A3N6QIK3_BRACR; Uncharacterized protein
STRINGBra025914.1-P1e-179(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.11e-151MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]