PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727278
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 243aa    MW: 27562.7 Da    PI: 6.5132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727278genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.6e-051451851155
                HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 RR +iN+++  L++++P +     k +  a++L + ++Y++sLq
  676727278 145 VRRGKINERLRCLQDIVPGC----YKSMGMATMLDEIINYVQSLQ 185
                6******************8....366999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.0E-12130195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.928134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-4138190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-12144202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-6146189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MANFESLSSE FQTIAMDIYS SLTQATDLNN NNSSSLQFQT LPPFSTCLDS LFLHRHQQQL  60
LDFPGKFSGS DNNFSSTSTL YHSDHNNVDE TKKRKALLQT LSSSENSGVS DNLNINTTET  120
GCSRRSKRLK KQKQEEEKER EVVHVRRGKI NERLRCLQDI VPGCYKSMGM ATMLDEIINY  180
VQSLQNQVEF LSMKLTAASS FYDFNSETDA VDSMQRAKAR EAVEMGRQTR DGSPVFHLST  240
WSL
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727278
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885791e-128AF488579.1 Arabidopsis thaliana clone bHLH044 putative bHLH transcription factor mRNA, partial sequence.
GenBankAK1172691e-128AK117269.1 Arabidopsis thaliana At1g18400 mRNA for putative bHLH transcription factor (bHLH044), complete cds, clone: RAFL16-82-F22.
GenBankAY1382531e-128AY138253.1 Arabidopsis thaliana putative bHLH transcription factor (BEE1) mRNA, complete cds.
GenBankBT0052681e-128BT005268.1 Arabidopsis thaliana At1g18400 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482284.11e-145PREDICTED: transcription factor BEE 1
SwissprotQ8GZ131e-111BEE1_ARATH; Transcription factor BEE 1
TrEMBLA0A3P5YFI01e-142A0A3P5YFI0_BRACM; Uncharacterized protein
STRINGBo5g025360.11e-132(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-101BR enhanced expression 1
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]