PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727388
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 230aa    MW: 26087.9 Da    PI: 9.9651
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727388genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.43.2e-221861245
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
               +ie +s rqv fskRr+g++KKA+EL++LC++eva+i++s+  k
  676727388 18 KIEKESHRQVAFSKRRAGLFKKASELCTLCGVEVAIIVYSPAKK 61
               599*************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.525969IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-28968IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.68E-281091IPR002100Transcription factor, MADS-box
CDDcd002653.70E-321081No hitNo description
PRINTSPR004044.2E-161131IPR002100Transcription factor, MADS-box
PfamPF003194.9E-251865IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-163146IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-164667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTSKKKGNTG RQRIRMVKIE KESHRQVAFS KRRAGLFKKA SELCTLCGVE VAIIVYSPAK  60
KPFSFGHPNV YTVLDRYRNN TPFPQRKQPQ ETTAARSELS LVLSQVEEEK KKGEVMRKSS  120
EMVKWSVEDM SLLQLQEMKS ALEELRNTIV VPPSYMNMST GFSCIYNSGY GNASSGVTHE  180
PPELSLRSAH TDHSQLGLGS PEQCHIRTEL RTEPVFHQIV IPTWVTSPRY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727388
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118127.17e-99PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_022547594.17e-99agamous-like MADS-box protein AGL61
SwissprotQ4PSU49e-61AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A397Y5G32e-97A0A397Y5G3_BRACM; Uncharacterized protein
STRINGBra026764.1-P3e-87(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-55AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]