PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727906
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 646aa    MW: 73455.8 Da    PI: 9.0812
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727906genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.2e-07462504140
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      +++W++eE + l ++  ++++g   +W+ I++++g+gR+ +++
        676727906 462 KQPWSKEEIDMLRKGMIKYPKGtsrRWEVISEYIGTGRSVEEI 504
                      79************************************99876 PP
2Myb_DNA-binding24.28e-08590633445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W++  +  lv+a k ++++   +W+++a+ ++ g+t  qck ++ 
        676727906 590 WSAVQERALVQALKTFPKEtsqRWERVAAAVP-GKTVIQCKKKFA 633
                      ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.1E-2195199IPR001623DnaJ domain
SuperFamilySSF465652.62E-2196177IPR001623DnaJ domain
SMARTSM002711.1E-1798173IPR001623DnaJ domain
PfamPF002267.5E-1899178IPR001623DnaJ domain
CDDcd062574.29E-1399170IPR001623DnaJ domain
PROSITE profilePS5007618.4199181IPR001623DnaJ domain
PRINTSPR006254.2E-9104122IPR001623DnaJ domain
PRINTSPR006254.2E-9122137IPR001623DnaJ domain
PRINTSPR006254.2E-9153173IPR001623DnaJ domain
PROSITE patternPS006360158177IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.603.1E-5455504IPR009057Homeodomain-like
SuperFamilySSF466891.35E-7457505IPR009057Homeodomain-like
PROSITE profilePS500906.272457512IPR017877Myb-like domain
SMARTSM007179.3E-7461514IPR001005SANT/Myb domain
PfamPF002493.9E-6462504IPR001005SANT/Myb domain
CDDcd001671.92E-4464504No hitNo description
SMARTSM007175.9E-8586638IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-9587635IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-4589634IPR009057Homeodomain-like
PfamPF002495.7E-6590634IPR001005SANT/Myb domain
PROSITE profilePS500906.806590636IPR017877Myb-like domain
CDDcd001678.18E-6590636No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MPSRRSNSAI KLIAYSEELV DGKPLYAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP  60
TDNEGSDKKV GDDKEKEYVP SFNSYSNKGK KKSGTQQQDH YALLGLSNLR YLATEDQIRK  120
SYREAALKHH PDKLATLLLA EETEEAKEAK KDEIESRFKA IQEAYEVLMD PTKRRIFDST  180
DEFDDEVPTD CAPQDFFKVF GPAFKRNARW SVNQRIPDLG DENTKLKDVD KFYNFWYAFK  240
SWREFPDEEE HDLEQADSRE ERRWMEKENA KTTAKARKEE HARIRTLVDN AYRKDPRILK  300
RKEEEKAEKQ QKKEAKLMAK KKQVEEAAIA AEEEKRRKEE EEKRAAESAQ QQKKAKEKEK  360
KLLRKERNRL RTLSAPLVAQ RLLDIAEEDI ENLCMTLNIE QLQNLCDKMG NKEGLELAKV  420
IKDGCDSSRD HEAKSKEKES DKTNGGTEPA NRVSVLDSAK KKQPWSKEEI DMLRKGMIKY  480
PKGTSRRWEV ISEYIGTGRS VEEILKATKT VLLQKPDSAK AFDSFLEKRK PTASIASPLS  540
TREELGESLP ATTTTTAKPP SKETVVGKSS TGQSSDSNGE ASGSSDTDGW SAVQERALVQ  600
ALKTFPKETS QRWERVAAAV PGKTVIQCKK KFAELKEIIR SKKTGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A6e-1519529820123Zuotin
5dje_B6e-1519529820123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319337KKKQVEEAAIAAEEEKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727906
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0081530.0AC008153.5 Arabidopsis thaliana chromosome 3 BAC F24K9 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187752.20.0DnaJ and Myb-like DNA-binding domain-containing protein
TrEMBLA0A178VPF00.0A0A178VPF0_ARATH; Uncharacterized protein
STRINGAT3G11450.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain