PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727972
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 261aa    MW: 29413.8 Da    PI: 5.4845
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727972genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.52e-1428108286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                W+++ + +Liea  ++  +l+rg+l++++W+ev++++   +  g  ++ +qCk++++ l+k+yk +k+  ++       t+ +fd+l+
  676727972  28 WSEDATATLIEAWGDRYVHLNRGNLRQNDWKEVADAVnssHGNGRPKTDVQCKNRIDTLKKKYKTEKAKPSS-------TWCFFDRLD 108
                *************************************9666667788******************9998875.......699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-2526109No hitNo description
SMARTSM005954.0E-435115IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
METTPETQSK SQSQSGSHRL PAGREDWWSE DATATLIEAW GDRYVHLNRG NLRQNDWKEV  60
ADAVNSSHGN GRPKTDVQCK NRIDTLKKKY KTEKAKPSST WCFFDRLDFL IGPVAKKSAG  120
AGGVKPALMN HSLNPAGSKS SGSSLDDDDD DDDDDVGDWG FVVRKHRRVE DLDPSEGSSC  180
RELARAILKL GEVYERIEGA KQQMMIELEK QRMEAAKELE LQRMNMLMDM QMELEKSKLG  240
KRRAASGYVI HSSCEDEFTE N
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727972
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535510.0AK353551.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-B11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407472.11e-154trihelix transcription factor ASIL2
SwissprotQ9LJG81e-33ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLE4MYF41e-153E4MYF4_EUTHA; mRNA, clone: RTFL01-52-B11
TrEMBLV4LEM31e-153V4LEM3_EUTSA; Uncharacterized protein
STRINGXP_006407472.11e-154(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-137sequence-specific DNA binding transcription factors