PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676727974

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

LBD

Protein Properties

Length: 163aa MW: 17934.6 Da PI: 7.0965

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676727974	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.3	6.9e-40	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+l+r+C++ C++apyf +++p +fa vhk+FGasnv+kll+++pee+r+++++sl+yeA++r++dPvyG++g i +lq+++ +l++++a+++++ 676727974 11 SCAACKLLKRRCTPTCIFAPYFRSSDPITFAKVHKVFGASNVSKLLNEVPEEQRQETVNSLAYEADVRLKDPVYGCIGAIASLQKKMLELQHDIAVARNR 110 6**********************************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.944	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.6E-39	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MRGHEPRSSS SCAACKLLKR RCTPTCIFAP YFRSSDPITF AKVHKVFGAS NVSKLLNEVP 60 EEQRQETVNS LAYEADVRLK DPVYGCIGAI ASLQKKMLEL QHDIAVARNR LLAHAGVNNH 120 VSPLDNSPEL AAFLDLIPYS DLMLLDGSGL DAHLYDLGQP PFV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-43	6	115	6	115	LOB family transfactor Ramosa2.1
5ly0_B	9e-43	6	115	6	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676727974

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254608	0.0	AC254608.1 Capsella rubella clone CAP16-D12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023641520.1	1e-111	LOB domain-containing protein 21
Swissprot	Q9SRL8	1e-108	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	R0HVY9	1e-109	R0HVY9_9BRAS; Uncharacterized protein
STRING	Bostr.19424s1045.1.p	1e-111	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10255	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-100	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]