PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727980
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 1205aa    MW: 137163 Da    PI: 6.8072
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727980genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32e-118619361896
                --HHH.HTT......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3  18 lpkkfaeeh......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                +p  f ++h      +g    +  ++l++  s  +Wevk+  ++++    lt+GW++F+ +++L++gD+ +F++dg+  f  +v+ 
  676727980 861 IPIAFYSRHikgttnEGY--ANAVVKLRSdASDLTWEVKM--DRQR----LTQGWQNFATSHDLRVGDIAIFRRDGDLLF--HVTT 936
                788888888865543222..3446777775888*******..9998....***********************6664333..6655 PP
2B362.56.7e-209911083498
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3    4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98  
                 + +++++l+++ l+lp  f +++g+ ++e  +++l +e+g+ W+  l++ k++++++l++GW++F+++ng +++D ++Fkl++ s++++v+++++
  676727980  991 ARVTPSSLTKDALSLPTAFSRSNGLMNRE-CEVILLNEDGKPWTTLLKIHKTKSHVYLRRGWRNFCRENGKRANDLMTFKLVQ-SGTKPVLQLCS 1083
                 456777888888***********877544.59*************************************************98.99999**9997 PP
3B344.52.8e-1411061193189
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
         B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89  
                 f++ ++++++lk+  l+lp kf++ ++++++  +++tl d+ g +++  l+ ++k gr+ ++k W++F++ang++ gD++ ++l+++ ++
  676727980 1106 FLTLTLTPYNLKKFKLCLPGKFVRLNDIENA--RKITLVDRYGFKMTTSLKPDNKFGRMRMGKEWRKFCEANGVNGGDSFELELIKEeED 1193
                 6778899****************99987755..58***************99*******************************9987343 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd065474.18E-124110412No hitNo description
PfamPF036441.9E-76119379IPR005201Glycoside hydrolase, family 85
SuperFamilySSF472401.9E-59681858IPR009078Ferritin-like superfamily
Gene3DG3DSA:1.20.1260.104.3E-77686860IPR012347Ferritin-related
PROSITE profilePS5090539.342691844IPR009040Ferritin- like diiron domain
CDDcd010565.97E-71694854No hitNo description
PfamPF002101.4E-28700843IPR008331Ferritin/DPS protein domain
PROSITE patternPS002040811831IPR014034Ferritin, conserved site
SMARTSM010192.0E-10852940IPR003340B3 DNA binding domain
SuperFamilySSF1019361.41E-13860947IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.856861940IPR003340B3 DNA binding domain
CDDcd100173.57E-8861937No hitNo description
Gene3DG3DSA:2.40.330.101.7E-15888947IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.5E-209861084IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-229861087IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-229871083No hitNo description
PROSITE profilePS5086314.179881084IPR003340B3 DNA binding domain
SMARTSM010198.8E-289881085IPR003340B3 DNA binding domain
PfamPF023621.2E-189901083IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-1511001200IPR015300DNA-binding pseudobarrel domain
CDDcd100176.42E-1211051191No hitNo description
SuperFamilySSF1019361.45E-1511051194IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.3511061204IPR003340B3 DNA binding domain
PfamPF023625.9E-1311061193IPR003340B3 DNA binding domain
SMARTSM010192.1E-1311061205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006879Biological Processcellular iron ion homeostasis
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0008199Molecular Functionferric iron binding
GO:0033925Molecular Functionmannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1205 aa     Download sequence    Send to blast
MRQLIRAYFS RRTLVYLYNL FLSISRKLLT SFPLSLVMPK SNEDAHVEAE SEAVPLLDLS  60
KPSSPISFPI KSLQDLKSRS YFDSFHSQFN RSTVPLRRDA EVLPNRPRVL VCHDMKGGYV  120
DDKWIQGCDN TAGYAIWHWY LMDVFVYFSH SLVTLPPPCW TNTAHRHGVK VLGTFITEWD  180
EGKATCKEML ATKESAQMYA ERLAELATAL GFDGWLVSFA LYFSLILLFT CLILPMYDSV  240
TVRGHLKWQD QLNEKNKPFF DLCDGIFMNY TWKESYPKLS ADVAGERNHD VYMGIDVFGR  300
GSFGGGQWTV DTALDLLKRS NVSVAIFAPG WVYETAQPPN FHTAQNKWWS LVEKSWGIVQ  360
TYPQVLPFYS DFNQGFGYHV SLEGRQLSDA PWYNVSCQSL QPLLEFKEDN TDIIQVKSDE  420
TSKLGILLSF SSPSHETKSI LVAPQEPIPR FDQIFEQCLV TSEQNVSEWT VHETSLVLDG  480
HTLTEISAFC YRKENSTKRP EYVALLGHIS IKDHAQLQQK PDSVPPASSW VLEAHNIELV  540
PGNSGSKILR VKLEWRQKQL EDSLFPGYNV YVENVKSSDV RSRKVLEKPR GERVLLGISH  600
LPAYYVSELV VEPEVKGVRF VVQPCGEDGS WRKLDDSPSL LMDLEGLSFS VQAAKGTTTK  660
SLTGVVFEPF EEVKKEMDLV PTTPLVSLAR HKFSDDSESA INDQINVEYN VSYIYHALYA  720
YFDRDNVGLK GFAKFFNDSS LEERGHAEKF MEYQNKRGGR VKLQSILMPF SEFDHEEKGD  780
ALYAMELALS LEKLTNEKLL KLQSVGVKNN DVQLVDFVES EFLGEQVEAI KKISEYVAQL  840
RRIGKGHGVW HFDQMLLHEN IPIAFYSRHI KGTTNEGYAN AVVKLRSDAS DLTWEVKMDR  900
QRLTQGWQNF ATSHDLRVGD IAIFRRDGDL LFHVTTFGPS CCEIQYNDDA GGGDDVFQIA  960
SESRHKNQGT RGTKQDLCDE DPASLVPCFV ARVTPSSLTK DALSLPTAFS RSNGLMNREC  1020
EVILLNEDGK PWTTLLKIHK TKSHVYLRRG WRNFCRENGK RANDLMTFKL VQSGTKPVLQ  1080
LCSSMYNRDC LRASSSSSSS TCQDRFLTLT LTPYNLKKFK LCLPGKFVRL NDIENARKIT  1140
LVDRYGFKMT TSLKPDNKFG RMRMGKEWRK FCEANGVNGG DSFELELIKE EEDTATRLLK  1200
FCTKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3a68_E1e-1116548591207Ferritin-4, chloroplastic
3a68_F1e-1116548591207Ferritin-4, chloroplastic
3a68_G1e-1116548591207Ferritin-4, chloroplastic
3a68_H1e-1116548591207Ferritin-4, chloroplastic
3a68_I1e-1116548591207Ferritin-4, chloroplastic
3a68_J1e-1116548591207Ferritin-4, chloroplastic
3a68_K1e-1116548591207Ferritin-4, chloroplastic
3a68_L1e-1116548591207Ferritin-4, chloroplastic
3a68_M1e-1116548591207Ferritin-4, chloroplastic
3a68_N1e-1116548591207Ferritin-4, chloroplastic
3a68_O1e-1116548591207Ferritin-4, chloroplastic
3a68_P1e-1116548591207Ferritin-4, chloroplastic
3a68_Q1e-1116548591207Ferritin-4, chloroplastic
3a68_R1e-1116548591207Ferritin-4, chloroplastic
3a68_S1e-1116548591207Ferritin-4, chloroplastic
3a68_T1e-1116548591207Ferritin-4, chloroplastic
3a68_U1e-1116548591207Ferritin-4, chloroplastic
3a68_V1e-1116548591207Ferritin-4, chloroplastic
3a68_W1e-1116548591207Ferritin-4, chloroplastic
3a68_X1e-1116548591207Ferritin-4, chloroplastic
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727980
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3121920.0AJ312192.1 Arabidopsis thaliana chloroplast partial mRNA for ferritin subunit 2 (fer2 gene).
GenBankAK1755790.0AK175579.1 Arabidopsis thaliana mRNA for putative ferritin subunit precursor, partial cds, clone: RAFL22-02-J08.
GenBankAK1756390.0AK175639.1 Arabidopsis thaliana mRNA for putative ferritin subunit precursor, partial cds, clone: RAFL22-13-A13.
GenBankAK1757690.0AK175769.1 Arabidopsis thaliana mRNA for putative ferritin subunit precursor, partial cds, clone: RAFL22-34-E21.
GenBankAK1758070.0AK175807.1 Arabidopsis thaliana mRNA for putative ferritin subunit precursor, complete cds, clone: RAFL22-40-H12.
GenBankAK1758990.0AK175899.1 Arabidopsis thaliana mRNA for putative ferritin subunit precursor, complete cds, clone: RAFL22-54-E11.
GenBankAK1759010.0AK175901.1 Arabidopsis thaliana mRNA for putative ferritin subunit precursor, complete cds, clone: RAFL22-54-J19.
GenBankAK1759100.0AK175910.1 Arabidopsis thaliana mRNA for putative ferritin subunit precursor, complete cds, clone: RAFL22-57-B22.
GenBankAK1760180.0AK176018.1 Arabidopsis thaliana mRNA for putative ferritin subunit precursor, partial cds, clone: RAFL22-72-I19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297068.20.0LOW QUALITY PROTEIN: cytosolic endo-beta-N-acetylglucosaminidase 2
TrEMBLA0A3N6QCT20.0A0A3N6QCT2_BRACR; Uncharacterized protein
STRINGXP_010464801.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.18e-67B3 family protein