PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676728128
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 231aa    MW: 26845.7 Da    PI: 7.5585
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676728128genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.46.5e-13132191362
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                ++++ +r+++NRe+A+rsR RK+ ++e+L+++v  L  eN++L ++l+    ++++l ++
  676728128 132 DDRKRKRMESNRESAKRSRMRKQRYTENLRDEVNRLGLENRELGNRLQIVLYHIQQLSTD 191
                57899***************************************9999888888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-15130194IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.0E-11131188No hitNo description
PROSITE profilePS5021710.461132195IPR004827Basic-leucine zipper domain
PfamPF001707.9E-11133191IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.62E-10134188No hitNo description
CDDcd147021.67E-15135182No hitNo description
PROSITE patternPS000360137152IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSTLPAFSFA EPGLVNQMSD FQTGFTPWDF DCSHLSSVIK SFLEPDIPSP YSGESETGSV  60
RVNTGLDSNK TGSDESCIGS IKTNSGSDDS NCFHGEPNPQ FDNLNSEDTR IRENATYHNR  120
KKLNRPVPQV TDDRKRKRME SNRESAKRSR MRKQRYTENL RDEVNRLGLE NRELGNRLQI  180
VLYHIQQLST DNYRLLSEQE ILRQRFSELR QILLFRQLQN QQQWGRDHQM V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119137RKKLNRPVPQVTDDRKRKR
2146151KRSRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676728128
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404751.11e-118regulatory protein opaque-2
TrEMBLA0A1J3G9Q71e-128A0A1J3G9Q7_NOCCA; Basic leucine zipper 43 (Fragment)
STRINGXP_006404751.11e-118(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.21e-113basic leucine-zipper 6