PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676728278
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ARR-B
Protein Properties Length: 619aa    MW: 69421.9 Da    PI: 5.7316
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676728278genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.31.7e-23383429451
    G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                ++Wt+eLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQ
  676728278 383 VDWTQELHKKFVQAVEQL-GVDQAIPSRILELMKVDGLTRHNVASHLQ 429
                79****************.***************************** PP
2Response_reg31.59.1e-128418012109
                   HHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHH CS
  Response_reg  12 ellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpee 106
                   +  r+ le+ +y +v++++d +eal  + ++   +++ ++ ++ ++ +  e +k +++++++lp i+++     +++ +++ +Ga +fl Kp +pe+
     676728278  84 DETRSKLESMDY-IVTTFTDESEALSAVSKSPesFHIAIVEVNTSDEN--ESFKFLEAAKDHLPTIMISNDHCIATTMKCIALGAVEFLQKPLSPEK 177
                   556778999***.***************99887899999998888755..78888888889********9999************************ PP

                   HHH CS
  Response_reg 107 lvk 109
                   l +
     676728278 178 LKN 180
                   986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.27E-1469188IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.4E-1570216No hitNo description
PROSITE profilePS5011025.7872186IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.14E-875185No hitNo description
PfamPF000721.3E-783180IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129411.871377436IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-21383429IPR009057Homeodomain-like
SuperFamilySSF466896.45E-14383429IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-21383430IPR006447Myb domain, plants
PfamPF002491.5E-6384429IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MESDQFLGQR DREKERESSR KRFKQICNKH SQATTVTEAR SGGVGRKNDA KPAMVFTAND  60
LSKWENFPKG LRVLLLVSDS SSADETRSKL ESMDYIVTTF TDESEALSAV SKSPESFHIA  120
IVEVNTSDEN ESFKFLEAAK DHLPTIMISN DHCIATTMKC IALGAVEFLQ KPLSPEKLKN  180
IWQHVVHKAF NDGGTNVSSL KPVKESVVSM LHLDTDMAID EKDPAPSTPQ LTQVSRLLDG  240
DRQDNMNCSV EYVNSLNEKE NSEDLDIGES KSVDTTNHDD NVIVKEEKGD GEKEEEEEGK  300
AGEPRGSEEE EEEGETGDRS QKTDTANSQK KEDETKPSNK SSGIKNLSSN KTSRKKVVLG  360
FSLLVVVAKQ FSLLLMSSFP FQVDWTQELH KKFVQAVEQL GVDQAIPSRI LELMKVDGLT  420
RHNVASHLQV KLTPKCLNVF EEIFLEMVTE SFRVLEQKFR MHRRNILPKE DHNHRWIQSR  480
ENHRHIQRQY NGFQQQHRPV MAYPVWGLPG VHPPGAVPPL WPPPLQSSGQ PPPWHWKPPY  540
PTVNGNAWGC PVGPPVTGTY ISPPVSGTFN TPPVTGTFNT PPATQLDEEM IDQVVKEAIS  600
KPWLPXKESQ PSLLLLPPV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676728278
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0415311e-158AB041531.1 Arabidopsis thaliana APRR2 mRNA for pseudo-response regulator 2, complete cds.
GenBankAF3857251e-158AF385725.1 Arabidopsis thaliana AT4g18020/T6K21_200 mRNA, complete cds.
GenBankAY1439631e-158AY143963.1 Arabidopsis thaliana At4g18020/T6K21_200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136894.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009136895.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009136896.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009136897.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A1J3FDM10.0A0A1J3FDM1_NOCCA; Two-component response regulator-like APRR2 (Fragment)
STRINGBra012623.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]