PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676728394
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GATA
Protein Properties Length: 525aa    MW: 58332.7 Da    PI: 7.6099
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676728394genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.41.1e-14741135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  676728394  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
               99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-10546No hitNo description
CDDcd002023.05E-15655No hitNo description
PfamPF003202.0E-12741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF139191.2E-9275368IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MGKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHA RADGEDNEDH  60
QRYQRMKSIS LSNKNKETKV LKRKSIQENL VIKRPVLEFS YGFKKAMVEE DASNRSSSGS  120
AISNSESCAQ FSSADGSELT GPSQSNAWDT TVPCKRRTCV GRPKTSSVEK LTKDLYNILQ  180
EQQSSCPSVS SEEDLLFENE MSMVSVEIGH GSVLMRNPHT FAREEESEAS SLSSVENKSS  240
ISDAYSHSVK RAEIGAERRS EAVGQAIKQE QLNRTKSQTG RVHVLGSHSS PLCSIDLKDV  300
FNFDEFIEQF TEEEQKKLTR LLPQIDSVNL PDSLRMMFES AQFKENFSLF QKLIADGVFE  360
MPSSSGAKLE DIRAIKKLAL SDFSKSRLVE SYNLLKRFMD NLLQEGEKWP GDPVTTTSIC  420
SNPNVPKNIV TIKRRCENQT PLKSESRGLM RSPKSVTKMK ASHESKVLTE NNGACFSPRS  480
LASVFAQEGA SKVFGYEGNC SPDQDLLLDL PSNGSFPQAE LLHQL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676728394
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532400.0AK353240.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-J12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414213.10.0GATA transcription factor 26 isoform X1
SwissprotQ8W4H10.0GAT26_ARATH; GATA transcription factor 26
TrEMBLE4MXJ30.0E4MXJ3_EUTHA; mRNA, clone: RTFL01-27-J12
TrEMBLV4P7U00.0V4P7U0_EUTSA; Uncharacterized protein
STRINGXP_006414213.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.30.0GATA transcription factor 26