PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676728416

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

LBD

Protein Properties

Length: 93aa MW: 10566.1 Da PI: 9.1544

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676728416	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	51.1	4e-16	24	77	47	100
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 k+lp++er++a++sl++eA++r++dP+yG+vg+i+ lq+q++++++ la++++e 676728416 24 KQLPQHERSEAAESLYFEAQCRIEDPIYGCVGIISLLQSQIQKAQNLLAKTNAE 77 6899******************************************99998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.353	1	78	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.9E-14	24	75	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MAHTRIYKNL KTSMKDFGSF SKKKQLPQHE RSEAAESLYF EAQCRIEDPI YGCVGIISLL 60 QSQIQKAQNL LAKTNAEIAL VQTTLPNSNF YLN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676728416

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010425379.1	1e-24	PREDICTED: LOB domain-containing protein 24-like
Refseq	XP_019085406.1	5e-25	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	3e-25	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A0D3BB79	4e-23	A0A0D3BB79_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6BC36	4e-23	A0A3P6BC36_BRAOL; Uncharacterized protein
STRING	Bostr.0556s0333.1.p	1e-24	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-27	LOB domain-containing protein 24