PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676728556
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 346aa    MW: 39190.6 Da    PI: 7.9487
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676728556genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-073454526
               --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                C f+++ G+C yG+rC++ H+
  676728556 34 VCTFYQK-GICLYGSRCRYEHV 54
               5******.***********997 PP
2zf-CCCH20.77.5e-07110132326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                +++C+ fa+ G C++G++C+ +Hg
  676728556 110 YPICS-FAAAGDCPRGNQCPHMHG 132
                78999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.784128IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-7426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9112956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-53153IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-43155IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-43454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.0013453IPR000571Zinc finger, CCCH-type
SMARTSM003560.028107133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.014107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF578503.83E-13164240No hitNo description
Gene3DG3DSA:3.30.40.102.9E-10168235IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001628.20E-4175235No hitNo description
PfamPF000975.0E-8176233IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.401176234IPR001841Zinc finger, RING-type
SMARTSM001841.9E-7176233IPR001841Zinc finger, RING-type
PROSITE patternPS005180200209IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.967263292IPR000571Zinc finger, CCCH-type
SMARTSM003560.63263291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSDRILCKFF VHGSCLKGEN CEYSHDSKDP ANNVCTFYQK GICLYGSRCR YEHVRTSQPQ  60
SLSASNVPRP PFCSDSHPQS LSTAYSSLLT QQKGDGEKSH NVYYIHPREY PICSFAAAGD  120
CPRGNQCPHM HGDICTTCGK KCLHPFRPEE REEHTKECEK KQKHIEALKK SQDIECSVCL  180
DRVLSKATPG ERKFGLLTEC DHPFCIQCIR NWRSSAPVSG MDVNSTLRAC PICRKLSYFV  240
VPSVVWYATP EEKKDIIDIY KAKLSSIDCK HFNFGNGNCP FGGSCFYKHA YPDGHLEEVV  300
LRHLGSQEGE NAIRVPWSPA DLKYPFLYNR MTMKSMINQP IGLVHD
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676728556
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0703660.0AY070366.1 Arabidopsis thaliana unknown protein (At3g08505) mRNA, complete cds.
GenBankBT0009880.0BT000988.1 Arabidopsis thaliana clone U18319 unknown protein (At3g08505) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407766.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ6IDS60.0C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLV4LZC70.0V4LZC7_EUTSA; Uncharacterized protein
STRINGXP_006407766.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-172C3H family protein