PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676728982
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 337aa    MW: 37113.4 Da    PI: 4.7327
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676728982genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.8e-14126173152
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                ++  GVr++k +g+W+AeIr+p     + +r +lg++ t e+Aa a+   +++
  676728982 126 TKPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTYETLEQAADAYATKKLE 173
                5789*****9.**********72....36******************877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.78E-18126167No hitNo description
PfamPF008473.6E-9126168IPR001471AP2/ERF domain
PROSITE profilePS5103217.859127184IPR001471AP2/ERF domain
SMARTSM003801.6E-12127181IPR001471AP2/ERF domain
PRINTSPR003672.7E-6128139IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-14129174IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-19130174IPR001471AP2/ERF domain
PRINTSPR003672.7E-6150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAEPKKRSSF QTTKPSKKPK KKTFQLNRLP GLSEDLKTMR KIRFVVNDPY ATDYSSSEED  60
ESKRRRKRYV CEIDRPFSQA AAQAESETSY CQESNNGGSK ARRISACSKK VLSSKTSQVV  120
GRSSVTKPVG VRQRKWGKWA AEIRHPITKT RTWLGTYETL EQAADAYATK KLEFDALAAA  180
NSAASCDLSE NAVSDSTASN EPDSLVSLSN VEAVSSIDLD STIHPQAAES KHSSFGFNFA  240
DLQIPDMGCF IDDSLIPNAC ELDFLLTEEN DQLLDDYCGI DDLNIIGLEC DGPSDLPDYD  300
FSDVEIDLGL IGTTIDKFAF VDHLATTTTT PLNIACP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676728982
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395614.10.0ethylene-responsive transcription factor ERF119
SwissprotQ9LUA21e-165EF119_ARATH; Ethylene-responsive transcription factor ERF119
TrEMBLE4MXS20.0E4MXS2_EUTHA; mRNA, clone: RTFL01-28-P02
TrEMBLV4K5P70.0V4K5P7_EUTSA; Uncharacterized protein
STRINGBostr.0556s0264.1.p0.0(Boechera stricta)
STRINGXP_006395614.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-149ERF family protein