PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729602
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 299aa    MW: 33498.4 Da    PI: 6.7957
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729602genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.3e-36231132101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+++++ed++++++isw+e+g+sfvv+++++fa+++Lpk+Fkh+nf+SFvRQLn+YgFkkv  ++         weF++++F++g+++ll++i+
     676729602  23 FLIKTFNLVEDHSIDDVISWNEDGSSFVVWNPTDFARDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNDYFRRGERHLLREIQ 110
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     676729602 111 RRK 113
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.7E-3813106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-5619112IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.27E-3420112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-182346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3123112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-187486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSDNGDAMVL TNESSQRSVP TPFLIKTFNL VEDHSIDDVI SWNEDGSSFV VWNPTDFARD  60
LLPKHFKHNN FSSFVRQLNT YGFKKVVPDR WEFSNDYFRR GERHLLREIQ RRKLTPQAAV  120
TPSPGVMAPA QRIQTVVSPS NSTEDQAVSP SSWFCQTGNG GLSVELLEEN EKLWSQNIQL  180
NRELTQMKSL CDSIFRLMSN YAGSPSDRSY SPGTSSSHDA MKPLEFLPAK RFLSETEVEE  240
GASPRLFGVP IGLKRTRSEG VQVKTVSTAA LGEISGGGGE NKETPWLRHN NLANQRVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-212311229129Heat shock factor protein 1
5d5v_B2e-212311229129Heat shock factor protein 1
5d5v_D2e-212311229129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729602
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013723399.11e-169heat stress transcription factor B-2a-like
SwissprotQ9SCW41e-146HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A3P6B9I41e-167A0A3P6B9I4_BRAOL; Uncharacterized protein
TrEMBLM4D0Q01e-167M4D0Q0_BRARP; Uncharacterized protein
STRINGBra010049.1-P1e-167(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-148heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]