PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729786
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GeBP
Protein Properties Length: 291aa    MW: 33247.4 Da    PI: 4.6016
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729786genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573105.34.9e-33107200297
     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                +fqrlwseeD++v+LqG+++fk++tgk  s+d+d+fye vk+si f+ ++ + lv+Kir L+kK+ +k+kk   g  psf k+ d+++fels++iWg
  676729786 107 YFQRLWSEEDDLVILQGMLKFKNETGKTHSEDMDGFYESVKDSITFEGKNlNRLVNKIRTLRKKYMTKRKK---GVAPSFLKSLDKQCFELSESIWG 200
                89********************************************9765489****************99...**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.2E-27108200IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MANKLHEPLQ DPPAASLSEE ESSEEASSSE DKEEEEAKTP VQTSPGEPES DNESESKTAV  60
SPLVSVALMK NTKRQRTEET TTSVSEIQVK MENDEEEIGT ETTKNSYFQR LWSEEDDLVI  120
LQGMLKFKNE TGKTHSEDMD GFYESVKDSI TFEGKNLNRL VNKIRTLRKK YMTKRKKGVA  180
PSFLKSLDKQ CFELSESIWG FEVESKMKKV KLESSETEGE IVETDWIMNS FIGESFSSFG  240
MKDEDVKKKW SLLPAETQRK VYVKWKVFEE KSAEVMVQKI GLLREVAYLL A
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729786
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.11e-40DNA-binding storekeeper protein-related transcriptional regulator