PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729922
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 144aa    MW: 16518.3 Da    PI: 10.5163
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729922genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind48.72e-1514102294
                   HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                   F +kly++++d++ + ++sw+  +n++sfvv+d ++f++++L+k     ++++ F+ QL   gFk + +  ++        eF+h+ F kg  +++
     676729922  14 FYMKLYQVVDDPSSDAIVSWNksNNQSSFVVWDLKRFEREILSKsSLMGRSLKEFMSQLRCRGFKVIAKGPGE-------LEFSHDDFAKGLVNKI 102
                   999******************6445599**************764788999******************9999.......*********9966543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.0E-18698IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-1010105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.08E-131197IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-121499IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-51437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-56880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MTKKLSMESS SSSFYMKLYQ VVDDPSSDAI VSWNKSNNQS SFVVWDLKRF EREILSKSSL  60
MGRSLKEFMS QLRCRGFKVI AKGPGELEFS HDDFAKGLVN KIMVKELSQR IQKLDDQVKA  120
IKCRIKAKKA VVKVDSLFQN LRIS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729922
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745665.12e-58heat shock factor protein HSF8-like
TrEMBLA0A078HHE25e-56A0A078HHE2_BRANA; BnaC04g32170D protein
TrEMBLA0A0D3C0165e-56A0A0D3C016_BRAOL; Uncharacterized protein
STRINGBo4g139630.19e-57(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.19e-26Winged helix-turn-helix transcription repressor DNA-binding