PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729938
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 138aa    MW: 15833.3 Da    PI: 10.3786
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729938genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind45.42.2e-14893291
                  HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
  HSF_DNA-bind  2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91
                  F  kly+i++d++ + ++sw+  +n++sf+++d ++f++++L+k     ++++ F+ Q    gFk + +  ++        eF+h+ F kg  
     676729938  8 FYIKLYQIVDDPSSDAIVSWNksNNQSSFILWDLKRFQREILSKsSVMGRSIKEFMSQFRSRGFKVIAKGPGE-------LEFSHDDFAKGLL 93
                  999******************6445599**************773678899******************9999.......********99854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-15391IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.0E-8499IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-12591IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.7E-11892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-5831IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-56274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MESSSSSFYI KLYQIVDDPS SDAIVSWNKS NNQSSFILWD LKRFQREILS KSSVMGRSIK  60
EFMSQFRSRG FKVIAKGPGE LEFSHDDFAK GLLNKTMVKD LSQRIQKLDD EVKAIKCRIK  120
AKKAAVKVDS LFQNLRIC
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729938
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745665.12e-57heat shock factor protein HSF8-like
TrEMBLM4EA011e-55M4EA01_BRARP; Uncharacterized protein
STRINGBra025608.1-P2e-56(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.14e-25Winged helix-turn-helix transcription repressor DNA-binding