PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676729950

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HSF

Protein Properties

Length: 138aa MW: 15903.5 Da PI: 10.4844

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676729950	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	48.8	1.9e-15	8	99	2	95
HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHH.HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX..XXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpk.yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg..kkelle 95 F +kly+i++d++ + ++sw+ +n++sf+v+d ++f++++L+k ++++ F+ QL gF+ + + ++ eF+h+ F kg kk++++ 676729950 8 FYMKLYQIVDDPSSDAIVSWNksNNQSSFIVWDLKRFQREILSKsSVMGRSLKEFMSQLRNRGFQVIVKGPGE-------LEFSHDDFAKGllKKTMVK 99 999****************6445599**********773677889*************99998.......******99833334444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.7E-17	3	91	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.6E-11	4	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.77E-13	5	91	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.0E-5	8	31	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.9E-12	8	92	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.0E-5	62	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MESSSSSFYM KLYQIVDDPS SDAIVSWNKS NNQSSFIVWD LKRFQREILS KSSVMGRSLK 60 EFMSQLRNRG FQVIVKGPGE LEFSHDDFAK GLLKKTMVKE LSQRIQKLDD QVKAMKCRIK 120 AKKAAVKVDS LFQNLRIC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676729950

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013745665.1	8e-61	heat shock factor protein HSF8-like
TrEMBL	M4EA01	5e-59	M4EA01_BRARP; Uncharacterized protein
STRING	Bra025608.1-P	8e-60	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3839	14	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	1e-26	Winged helix-turn-helix transcription repressor DNA-binding