PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676730070
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 188aa    MW: 20719.3 Da    PI: 10.5698
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676730070genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-1991151155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpse..ng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr+++ +g+W+AeIr+ +   +g        r +lg+f+taeeAa a+++a+ +l g
  676730070  91 KKFRGVRQRP-WGKWAAEIRCGKAakGGggggGGpLRLWLGTFDTAEEAALAYDNAAIRLIG 151
                59********.**********66677335764449************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.6E-321188IPR017392AP2/ERF transcription factor ERF/PTI6
PROSITE profilePS5103221.28592159IPR001471AP2/ERF domain
PfamPF008471.1E-1192151IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1792159IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.1E-2692159IPR001471AP2/ERF domain
SMARTSM003803.3E-2892165IPR001471AP2/ERF domain
PRINTSPR003672.7E-1193104IPR001471AP2/ERF domain
CDDcd000185.50E-2393159No hitNo description
PRINTSPR003672.7E-11125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MKRIVRISFT DAEATDSSSS EDEQRTNTTE SSTPHPRRSR GKRFVKEIVF DPTETAEVRK  60
TTRFKLRIPG RRLNGEKMVM TMMKKKKKKK KKFRGVRQRP WGKWAAEIRC GKAAKGGGGG  120
GGGPLRLWLG TFDTAEEAAL AYDNAAIRLI GPDAPTNFAR PKVGDDDDEA SAASSADASA  180
SRDEEEDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1789158262ATERF1
3gcc_A6e-1789158262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18391KKKKKKKKK
28591KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676730070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013727248.12e-64ethylene-responsive transcription factor ERF069
SwissprotQ9C9958e-54ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A078FDP33e-62A0A078FDP3_BRANA; BnaC07g13400D protein
TrEMBLA0A0D3D7823e-62A0A0D3D782_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EBJ33e-62A0A3P6EBJ3_BRAOL; Uncharacterized protein
STRINGBo7g056530.14e-63(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22985.11e-30ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]