PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676730168
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TALE
Protein Properties Length: 149aa    MW: 17124.2 Da    PI: 7.5129
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676730168genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.5e-09921262155
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                k +yp++ ++  LA+ +gL+++q+ +WF N+R ++
  676730168  92 KWPYPTEGDKIALADATGLDQKQINNWFINQRKRH 126
                569*****************************985 PP
2ELK31.53.8e-114667122
        ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
               +LK++LlrK++++++sLk EFs
  676730168 46 DLKDRLLRKFGSRISSLKLEFS 67
               69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037899.0E-84667IPR005539ELK domain
PROSITE profilePS512139.834666IPR005539ELK domain
SMARTSM011886.3E-54667IPR005539ELK domain
PROSITE profilePS5007112.34166129IPR001356Homeobox domain
SuperFamilySSF466892.91E-1967142IPR009057Homeodomain-like
SMARTSM003899.4E-1368133IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-2771130IPR009057Homeodomain-like
CDDcd000862.23E-1175130No hitNo description
PfamPF059203.8E-1786125IPR008422Homeobox KN domain
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEVTIHCGGF FTAALNNQDG AISSDEELSG GDEISQDGKQ RCEDRDLKDR LLRKFGSRIS  60
SLKLEFSKKK KKGKLPREAR QALLDWWNVH NKWPYPTEGD KIALADATGL DQKQINNWFI  120
NQRKRHWKPS DNMPFAMMDD SSGSFFTEE
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676730168
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008598.17e-85homeobox protein knotted-1-like 6
SwissprotQ84JS64e-83KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A078JTL78e-85A0A078JTL7_BRANA; BnaCnng70390D protein
TrEMBLA0A0D3CCQ08e-85A0A0D3CCQ0_BRAOL; Uncharacterized protein
STRINGBo5g039530.11e-85(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.21e-77KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]