PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676730178

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

YABBY

Protein Properties

Length: 230aa MW: 25736 Da PI: 6.0295

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676730178	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	244.2	2.5e-75	9	181	2	169
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelle.elkveeenlksnvekeesastsv 96 ++f+ ++q+C+vqC+fC+til+vsvP+tsl++vvtvrCGhCtsllsvnl+kas +ll++ shlde++kee+++ +++veee++k+ +ek++s++t v 676730178 9 QLFDLPGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASfiplHLLTSLSHLDEAGKEEVAAtTDGVEEEACKVPQEKDNSPTTLV 108 78999********************************************9999999***********8761678999***********99 PP YABBY 97 sseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 +s+ +e+ed++v+rv++ v++PPekrqr+Psayn+fikeei+r+k++nP+++h+eafs+aaknWahfP++ ++ 676730178 109 TSSD-NEDEDRDVSRVYQvVNKPPEKRQRAPSAYNCFIKEEIRRLKSQNPSMAHKEAFSLAAKNWAHFPPVQNK 181 9977.999******899***********************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.9E-59	14	180	IPR006780	YABBY protein
SuperFamily	SSF47095	7.99E-9	122	177	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.5E-6	128	177	IPR009071	High mobility group box domain
CDD	cd00084	0.0036	136	172	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MPNMTTLNQL FDLPGQICHV QCGFCTTILL VSVPFTSLSM VVTVRCGHCT SLLSVNLMKA 60 SFIPLHLLTS LSHLDEAGKE EVAATTDGVE EEACKVPQEK DNSPTTLVTS SDNEDEDRDV 120 SRVYQVVNKP PEKRQRAPSA YNCFIKEEIR RLKSQNPSMA HKEAFSLAAK NWAHFPPVQN 180 KRAASDHCFC EDDNSALLSC NVLEDHEESN NGFRERKAQR HSIWGKSPFE

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676730178

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF195047	0.0	AF195047.1 Arabidopsis thaliana INNER NO OUTER (INO) mRNA, complete cds.
GenBank	BT026410	0.0	BT026410.1 Arabidopsis thaliana At1g23420 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009115528.1	1e-158	PREDICTED: axial regulator YABBY 4
Refseq	XP_013662883.1	1e-158	axial regulator YABBY 4
Refseq	XP_013696181.1	1e-158	axial regulator YABBY 4
Swissprot	Q9LDT3	1e-145	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A3P5YGQ6	1e-157	A0A3P5YGQ6_BRACM; Uncharacterized protein
STRING	A0A087HQN1	1e-156	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8044	27	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-147	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]