PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676730208

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

M-type_MADS

Protein Properties

Length: 111aa MW: 12633.4 Da PI: 7.5161

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676730208	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.4	2.2e-19	15	63	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k++e++ r vtfskR++gi+KK +E+ +LC++e+a ++fs++gk y++ 676730208 15 KKVEDDGDRMVTFSKRKAGIFKKMNEIATLCNVEAAFLVFSESGKPYTF 63 5789999*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.3E-24	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.82	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-22	8	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-16	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.6E-22	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-16	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-16	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MSLKQTKGKQ NIEMKKVEDD GDRMVTFSKR KAGIFKKMNE IATLCNVEAA FLVFSESGKP 60 YTFGHPSVNE GFGRLKSSLR HEPSERDDIN TGPLVEADKR EMIEELMKTY D

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676730208

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018435277.1	8e-42	PREDICTED: agamous-like MADS-box protein AGL23
Swissprot	Q4PSU4	5e-18	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	V4NSM7	8e-39	V4NSM7_EUTSA; Uncharacterized protein
STRING	Bostr.2570s0298.1.p	2e-40	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	6e-42	AGAMOUS-like 57

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]