PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676730454
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Dof
Protein Properties Length: 201aa    MW: 22274.3 Da    PI: 4.4538
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676730454genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof102.33e-322569650
     zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvP 50
                +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvP
  676730454 25 PSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVP 69
               58******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088425.1922579IPR003851Zinc finger, Dof-type
PfamPF027014.5E-282670IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102763IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-222769IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MERTEALTSS FIWRPNANAN AEITPSCPRC GSSNTKFCYY NNYSLTQPRY FCKGCRRYWT  60
KGGSLRNVPP DEPTLQENRD YAAVVATDFL VDNPTGDSTE PSWSMDIGDG HQHHYDHQVE  120
HIVEACGYNG LPPFPGEELL SIDTNGVWSD ALLVGHNHVD VGGMTPAQAV HEPVVHFADE  180
SNDSTNLLFG SWSPFDFSAD G
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676730454
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0503008e-89AL050300.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F22O6.
GenBankCP0026868e-89CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503986.11e-123PREDICTED: dof zinc finger protein DOF3.5
SwissprotQ9SVC51e-119DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLD7LU631e-117D7LU63_ARALL; Dof-type zinc finger domain-containing protein
STRINGXP_010503986.11e-122(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91412238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.11e-121Dof family protein