PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676731062
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 682aa    MW: 76180.3 Da    PI: 7.8858
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676731062genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.6e-11326352127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+++ rtG C++G++C+F+H++
  676731062 326 PGEPNCSYYIRTGLCRFGSTCRFNHPR 352
                5789*********************96 PP
2zf-CCCH36.77.1e-12373397327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C ++++tGtCk+G +CkF+H++
  676731062 373 QPECEYYLKTGTCKFGVTCKFHHPR 397
                799********************96 PP
3zf-CCCH375.8e-12419443327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C +f+rtG+Ck+G++CkF+H++
  676731062 419 EVDCAYFLRTGHCKFGATCKFNHPQ 443
                578********************97 PP
4zf-CCCH36.21e-11562588127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+f+++tG Ck+G  CkF+H++
  676731062 562 PGQPECQFYMKTGDCKFGTVCKFHHPR 588
                5789*********************96 PP
5zf-CCCH34.53.5e-11608634127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ++++lC f+ r+G+Ck+G++CkF H++
  676731062 608 PGEPLCVFYTRYGICKFGPSCKFDHPM 634
                589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577561.14E-7526IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.102.4E-6623IPR001878Zinc finger, CCHC-type
PfamPF000981.1E-7723IPR001878Zinc finger, CCHC-type
SMARTSM003434.5E-6723IPR001878Zinc finger, CCHC-type
PROSITE profilePS5015811.301823IPR001878Zinc finger, CCHC-type
ProDomPD0896399.0E-4555167IPR012923Chromosome segregation in meiosis protein 3
PfamPF079622.4E-1974165IPR012923Chromosome segregation in meiosis protein 3
PROSITE profilePS5010314.267325353IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-4325352IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7327352IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5330353IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4331352IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.108370398IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5370397IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9373397IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6374399IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4376397IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99416444IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6416443IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5419445IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9419443IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4422442IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08561589IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5561588IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-8563588IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5565590IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187607635IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7607634IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-8609634IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5610634IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4612632IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006974Biological Processcellular response to DNA damage stimulus
GO:0007049Biological Processcell cycle
GO:0017148Biological Processnegative regulation of translation
GO:0048478Biological Processreplication fork protection
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0008270Molecular Functionzinc ion binding
GO:0010313Molecular Functionphytochrome binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MESAPTGCFK CGRPGHWSRD CPSSGPATGN SGPPSSTPSQ TPNNDSQRSF AKSAAGRSGA  60
GVPKVTKTRV QRPKLTPDML LSEDGLGYVL RHFPRSFKYR GRGKEASRFS PFLLLIFDLG  120
NLIRLYSEWH SHLLPYYSFD QFVHKVQQVA ATKRVKTCIN ELRERVASGV DPNKLYEKQE  180
ENALHSDDQC DIDMEQPSYD EENIPTKTVD ADADAFQDSM LNEIFDNAVD SGPSSKLPSV  240
EQNMAKSSEL TEEQRARMEA NRLKAMERAQ NISEEQRLRM EANRLKALER AKARLQPNQE  300
FCPDAMWQMN LSSDETMETG SYPERPGEPN CSYYIRTGLC RFGSTCRFNH PRDRELVIAT  360
ARMRGEYPER IGQPECEYYL KTGTCKFGVT CKFHHPRNKA GIAGRVSLNM LGYPLRSNEV  420
DCAYFLRTGH CKFGATCKFN HPQPQPTTNV MVPTSGQQSY PWSRASFIAN PRWQDPSGFT  480
PLLMPQGVVP VQGWNPYSGQ LGSVSPSGTG NDHDNYRNLQ QSEIKESGSQ SQGSFSGFNS  540
GASVPVGGFY ALPRENVFPE RPGQPECQFY MKTGDCKFGT VCKFHHPRNR QAPPPDCLLS  600
AIGLPLRPGE PLCVFYTRYG ICKFGPSCKF DHPMRILAYD NTASETDEVV ETSSGHSRRI  660
SVSETRQATV TSGQDTTIDA QQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap676731062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296584.20.0zinc finger CCCH domain-containing protein 33
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A078INM20.0A0A078INM2_BRANA; BnaA05g33310D protein
STRINGCagra.1194s0020.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]