PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676731258
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family LBD
Protein Properties Length: 274aa    MW: 28953.3 Da    PI: 8.249
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676731258genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.37.1e-40531541101
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael+++++
  676731258  53 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQS 152
                7***********************9989**********************************************************************99 PP

     DUF260 100 el 101
                +l
  676731258 153 QL 154
                85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.21652154IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3953151IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MADQQRSGNN TSDSRRKSAA GRRTSQHTTT SSLSSGGGAM AAAVTTGTGT ASPCGACKFL  60
RRKCVSGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLH HIPVNRRHDA VVTISYEAQA  120
RLSDPVYGCV STILALQQQV ASLQAELSVV QSQLINSRVA MANVMQQQQS HQQQQLVVMQ  180
QPEYSNNSSA STTLAGAAMN SLTATAAEAA VAVGYDLMAP ANLEHSLQPI PRHQQRRGNQ  240
LDDEEESGTD FSVAVGSTGV ATEVIFPAES FHRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-40431551112LOB family transfactor Ramosa2.1
5ly0_B3e-40431551112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676731258
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440564.11e-156PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV31e-147LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A291LR041e-153A0A291LR04_BRARR; Transcription factor LBD20
TrEMBLA0A398AU891e-153A0A398AU89_BRACM; Uncharacterized protein
TrEMBLM4F5T01e-153M4F5T0_BRARP; Uncharacterized protein
STRINGBra036436.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-116LOB domain-containing protein 20