PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676731436
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 338aa    MW: 38934.4 Da    PI: 10.0463
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676731436genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.9e-057294223
               EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
               +C+ Cgk F+    Lk+H ++ H
  676731436 72 PCEECGKEFRYEKCLKKHRQVmH 94
               6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.89E-87093No hitNo description
PROSITE profilePS5015711.6977199IPR007087Zinc finger, C2H2
SMARTSM003550.0437194IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807394IPR007087Zinc finger, C2H2
SuperFamilySSF576674.89E-8291318No hitNo description
PROSITE profilePS501578.933296323IPR007087Zinc finger, C2H2
SMARTSM003551.1296318IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-7296318IPR007087Zinc finger, C2H2
PROSITE patternPS000280298318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDDQEELEKP IFELRHMKLR SSRALINRNK KKRLGESGNH YEEIFCYYGL RENPKRTQKS  60
PLGTRSKKRM IPCEECGKEF RYEKCLKKHR QVMHSLKQKK SDPMMRRDLF CCFVGVKRRK  120
RSKRVSRYNK SHRYSVSSSS SFTNFTVSED HGELLEVAES LIMLSKSGGA ALVSKLREFE  180
QKLVGEFTNG SLSNEHKLVG ISTEYDGTSK EVLGFLGDKK VIKVDASGHL KRVGGAGSFR  240
EEVGGLERVS LEEDKPGLML KNDETDIEQR LDGQEAALED SKSGSESFQM NSESLHRCRL  300
CDRVFMTYQA LGGHQTFHRM KMKSEKSKHE MQRRISRS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676731436
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408453.21e-101LOW QUALITY PROTEIN: uncharacterized protein LOC18023566
TrEMBLV4NT631e-100V4NT63_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006408453.11e-101(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.14e-26C2H2 family protein