PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676731452
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23475.7 Da    PI: 9.5569
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676731452genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.91.9e-161564150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               kr+e +  r vtfskRr+gi  K +E+SvLC+++v  +i+s  gk y++ 
  676731452 15 KRVEKNEDRMVTFSKRRTGIYTKLSEISVLCGVDVGFLIYSGAGKPYTFG 64
               6889999*****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-20766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.792767IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-23784IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-16929IPR002100Transcription factor, MADS-box
PfamPF003194.2E-191663IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MKVKKTKGKQ KIDIKRVEKN EDRMVTFSKR RTGIYTKLSE ISVLCGVDVG FLIYSGAGKP  60
YTFGSPSFDA VAQRFLERFH HQKTINGEGS SRSSSSSMIV DAHQKVRMDE LCKNLNDLTE  120
QTNAEEEKRK KAEAAYAPSL PVKSDAWWKV KPKDEQEAKM LLKRFEMFYE DLCDVATEKC  180
RGRIDASTSS LLPHQANVTR DDSNLNG
Cis-element ? help Back to Top
SourceLink
PlantRegMap676731452
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639481.19e-87PREDICTED: agamous-like MADS-box protein AGL62
RefseqXP_022569565.19e-87agamous-like MADS-box protein AGL29
TrEMBLA0A397XXX91e-85A0A397XXX9_BRACM; Uncharacterized protein
STRINGBo5g061120.13e-86(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.11e-46AGAMOUS-like 64