PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676731456

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 257aa MW: 28147.5 Da PI: 4.3232

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676731456	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.1e-05	205	241	13	54
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+++++ + Lr+++P + ++ a++L +Av+Y+ksL 676731456 205 RKKMKKMMGMLRKIVPGG-----EQMNTASVLDEAVQYLKSL 241 899***********95.....68*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.398	192	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0049	199	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-7	205	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-8	205	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MGDGNMNVPY ASASSFDALF PPCAKLPYHG VELQPSAVCP KNFVIFDQTY DRSQVMYHPE 60 LTHRLVNSPS LNGLATTFQN EYVGESFGNY GQQESYGNYG QQESYGNYGQ QESYGNYGQP 120 EVSTSHQEDP NEIDALLSAD EDYEDDDDAD ENGGDSEEVS TARNSSREYG NTSAESCCSS 180 YGYKSSRSKQ SLSGSASCNN DGKGRKKMKK MMGMLRKIVP GGEQMNTASV LDEAVQYLKS 240 LKIEAQKLGV GNFSNQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	211	GRKKMKKMM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676731456

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353252	1e-144	AK353252.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-J23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499513.2	1e-120	PREDICTED: transcription factor bHLH144-like
Swissprot	Q9ASX9	1e-111	BH144_ARATH; Transcription factor bHLH144
TrEMBL	R0GKS4	1e-113	R0GKS4_9BRAS; Uncharacterized protein
STRING	XP_006303619.1	1e-113	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6195	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	9e-95	bHLH family protein

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]