PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676731720
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 295aa    MW: 33850.6 Da    PI: 4.3985
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676731720genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.2e-17481201793
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 +p +f e+ + +   ++t +l+ + g +W+v++  +k ++r ++t+GW +F+++++Lk+g+f++F +dg ++fe  
  676731720  48 AIPMSFNEHLQDP--LPQTAKLQGTGGGVWTVRF--TKIRDRAYFTAGWAKFAEDHELKDGEFLTFVYDGFHTFEVS 120
                6999998555644..899****************..********************************986777444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.84432125IPR003340B3 DNA binding domain
CDDcd100173.56E-1634122No hitNo description
SMARTSM010191.9E-1239125IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-2140127IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-1945125IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-1448118IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-10200281IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-7200282IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.098204292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MKMMLFFLVS SRFSSQKRPL NQWLNLDFSY KQVSDVYTFV FVFGDYQAIP MSFNEHLQDP  60
LPQTAKLQGT GGGVWTVRFT KIRDRAYFTA GWAKFAEDHE LKDGEFLTFV YDGFHTFEVS  120
VYGDGGCKEI RAVVETVELS DADSNEEEEE DASVDADSDD EENKDDPSFD ADDEEVSVYP  180
VDSEETSSDA AGLSNMEIME NPYFTTNLKN RIYELLIPAN VVKDHGLTFG NSIKYIDEEG  240
VMTGHKGNWA DDRVCFKGWD RICRRNRLRE QDIVHCEMLH DRKKVHSIKI TITRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A5e-164912726104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676731720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892691e-105AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442734.11e-134PREDICTED: B3 domain-containing protein REM20-like isoform X1
RefseqXP_018442735.11e-134PREDICTED: B3 domain-containing protein REM20-like isoform X2
SwissprotQ8LAV52e-88REM20_ARATH; B3 domain-containing protein REM20
TrEMBLA0A078FJC51e-127A0A078FJC5_BRANA; BnaC06g14560D protein
STRINGBo6g067300.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.19e-85B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]