PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676731732
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 259aa    MW: 30874.4 Da    PI: 6.0047
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676731732genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W +eEde+lv+ v++lG ++W++ ar  g++R++k+c++rw +yl
        676731732 11 RGPWLEEEDEQLVKFVTLLGERRWDSLARVSGLKRSGKSCRLRWMNYL 58
                     89********************************************97 PP
2Myb_DNA-binding53.84.4e-1764108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eE+ ++ ++++++G++ W++Iar+++ gRt++++k++w+++
        676731732  64 RGPMSQEEEIIIFQLHALWGNK-WSKIARRLP-GRTDNEIKNYWRTH 108
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.113658IPR017930Myb domain
SuperFamilySSF466893.26E-279105IPR009057Homeodomain-like
SMARTSM007174.6E-141060IPR001005SANT/Myb domain
PfamPF002492.1E-141158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-201265IPR009057Homeodomain-like
CDDcd001677.99E-91358No hitNo description
PROSITE profilePS5129426.7459113IPR017930Myb domain
SMARTSM007171.3E-1663111IPR001005SANT/Myb domain
PfamPF002492.6E-1564108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2466113IPR009057Homeodomain-like
CDDcd001677.44E-1066109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDCKKEDALR RGPWLEEEDE QLVKFVTLLG ERRWDSLARV SGLKRSGKSC RLRWMNYLNP  60
RLKRGPMSQE EEIIIFQLHA LWGNKWSKIA RRLPGRTDNE IKNYWRTHFR KKVEAQNYDQ  120
RCKYRNDMYF AADKIIDWSG YTGGELLRKY KETEITWTRT TTQEHGFDET VNESKHINME  180
HDKETNRGIC EQESFGVMNS PFENRMSDWI SEISTDQSDA NLLEDHSSSS SENNININVG  240
SWWFQETRDF EEFSCSLWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2891132105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676731732
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892691e-132AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.
GenBankAC1895021e-132AC189502.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB087M20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603906.11e-151PREDICTED: transcription factor MYB59
RefseqXP_022563629.11e-151transcription factor MYB27-like
SwissprotQ9SCP11e-132MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A0D3DSP91e-150A0A0D3DSP9_BRAOL; Uncharacterized protein
STRINGBo8g082570.11e-151(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-120myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]