PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676731736
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family S1Fa-like
Protein Properties Length: 762aa    MW: 83176.5 Da    PI: 7.1609
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676731736genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA127.54e-40696762470
       S1FA   4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 
                a++ea+GlnPGlivllv+gg+l++fl++n +lyvyaqknlPP+kkkPvskkklkreklkqGv+vPGe
  676731736 696 AAAEARGLNPGLIVLLVIGGPLVLFLIANCVLYVYAQKNLPPKKKKPVSKKKLKREKLKQGVPVPGE 762
                689***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498994.13E-3928198IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd068995.43E-4856192No hitNo description
PfamPF001391.7E-3563199IPR001220Legume lectin domain
Gene3DG3DSA:2.60.120.2003.6E-7079340IPR013320Concanavalin A-like lectin/glucanase domain
PROSITE patternPS0030708187IPR019825Legume lectin, beta chain, Mn/Ca-binding site
SuperFamilySSF561127.24E-84308635IPR011009Protein kinase-like domain
PROSITE profilePS5001139.594326610IPR000719Protein kinase domain
PfamPF000692.0E-53326599IPR000719Protein kinase domain
SMARTSM002203.3E-42326601IPR000719Protein kinase domain
PROSITE patternPS001070332355IPR017441Protein kinase, ATP binding site
CDDcd140663.84E-91332601No hitNo description
Gene3DG3DSA:3.30.200.208.7E-24341404No hitNo description
Gene3DG3DSA:1.10.510.109.1E-46405602No hitNo description
PROSITE patternPS001080446458IPR008271Serine/threonine-protein kinase, active site
PfamPF046896.1E-35698762IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MSFPPTVSLL LCFFFFFFFF FFFSNGATTE FDFSTLAISN LKLLGDARLS NDIVSLTPDL  60
SVPNSGVGSL GLAGSLGSKF VAVEFDTLMD VDLKDINSNH VGFDVNGVVS SVSGDLGEVE  120
IDLKSGNTIN SWIEYDGLTR VFNVSVSYSN LKPKSPVLSF PLDLDRYVND FMFVGFSGST  180
QGSTESHRIE WWSFKSSFGS GSGQTGPSPP TSNLVNRNPD SNSVNSSPPL ASQPSSSATP  240
ISSHSKTSSS SSSSSCHNHL CKGSPGAIAG VVTAGAFFLA LFAGVLFWVY SKKFKRVERS  300
DSFASEIIKT PKEFSYKELK AGTKNFNESR VIGHGAFGIV YRGVLPETGD IVAVKRCSHS  360
SQDKKNEFMS ELSIIGSLRH RNLVSLQGWC HEKGEILLVY DLMPNGSLDK ALFESRFPLP  420
WDHRKKILLG VASALAYLHR ECENQVIHRD VKSSNIMLDE NFNAKLGDFG LARQMEHDKS  480
PEATVAAGTM GYLAPEYLLT GRATEKTDVF SYGAVVLEVV TGRRPIEKDL SVQRHNVGSN  540
PNLVEWVWGL YKEGKVSTAA DSRLEGMFDE GEMWRVMVVG LACSHPDPDA RPTMRSVVQM  600
LIGEADVPVV PKSRPTMSFS TSHLLLSLQD TLSDCNTLAL NSSRSSSWSV PEHNVIIRGD  660
DDHLIFVSDK SFSFSSYHSY VAGADLTNLG SYSWTAAAEA RGLNPGLIVL LVIGGPLVLF  720
LIANCVLYVY AQKNLPPKKK KPVSKKKLKR EKLKQGVPVP GE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cth_A2e-893126203306Concanavalin A-like lectin protein kinase family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676731736
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613776.10.0PREDICTED: L-type lectin-domain containing receptor kinase VIII.1
RefseqXP_013613778.10.0PREDICTED: L-type lectin-domain containing receptor kinase VIII.1
RefseqXP_013666974.10.0L-type lectin-domain containing receptor kinase VIII.1-like
RefseqXP_022556687.10.0L-type lectin-domain containing receptor kinase VIII.1-like
SwissprotQ9LFH90.0LRK81_ARATH; L-type lectin-domain containing receptor kinase VIII.1
TrEMBLA0A0D2ZQP40.0A0A0D2ZQP4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C7540.0A0A3P6C754_BRAOL; Uncharacterized protein
STRINGBo00703s150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM376923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.22e-17WRKY family protein
Publications ? help Back to Top
  1. Nühse TS,Stensballe A,Jensen ON,Peck SC
    Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database.
    Plant Cell, 2004. 16(9): p. 2394-405
    [PMID:15308754]
  2. Bouwmeester K,Govers F
    Arabidopsis L-type lectin receptor kinases: phylogeny, classification, and expression profiles.
    J. Exp. Bot., 2009. 60(15): p. 4383-96
    [PMID:19773388]
  3. Eggermont L,Verstraeten B,Van Damme EJM
    Genome-Wide Screening for Lectin Motifs in Arabidopsis thaliana.
    Plant Genome, 2018.
    [PMID:28724081]