PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676732362

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 389aa MW: 45014.9 Da PI: 6.409

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676732362	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.3	1e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPtdeelv++yL+kkv++k++e+ ++ik+vd+yk+ePwdL + k+ +ee+ ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++ ++ 676732362 7 VPPGFRFHPTDEELVDYYLRKKVASKRIEI-DFIKDVDLYKIEPWDLLElcKIGNEEQsEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKTIYL-RN 104 69**************************.99**********743455554445**********************************.88 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 +l+g++ktLvfykgrap+g+k+dW+mheyrle 676732362 105 SLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 9***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-61	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	59.675	7	156	IPR003441	NAC domain
Pfam	PF02365	1.2E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MNPISHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DVDLYKIEPW DLLELCKIGN 60 EEQSEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKTI YLRNSLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKRLAA TARRMGDYDS SPSHWYDDQL 180 SFMASELDSN SPRPILPNHQ HHYSRQHHQQ PLPYGLNASS YYALNSNPGL QCKQELELHY 240 SHMVHQPKNN HLHESTFLQL PQLESPNSNC NSLPYGSSDN GNSTRNIGNL QLSSNLSHEE 300 QLQQGNQSFS SFYYDQGVDQ VNTDWRVLDK FVASQLSNEE VAAAASVSAS TRQNNTKIDV 360 RNTDYQVDEG MNLLENDSER LVEMGEEYM

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MNPISHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DVDLYKIEPW DLLELCKIGN  60
EEQSEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKTI YLRNSLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKRLAA TARRMGDYDS SPSHWYDDQL  180
SFMASELDSN SPRPILPNHQ HHYSRQHHQQ PLPYGLNASS YYALNSNPGL QCKQELELHY  240
SHMVHQPKNN HLHESTFLQL PQLESPNSNC NSLPYGSSDN GNSTRNIGNL QLSSNLSHEE  300
QLQQGNQSFS SFYYDQGVDQ VNTDWRVLDK FVASQLSNEE VAAAASVSAS TRQNNTKIDV  360
RNTDYQVDEG MNLLENDSER LVEMGEEYM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-50	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676732362

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006391831.1	0.0	NAC domain-containing protein 26
Swissprot	F4HYV5	0.0	NAC26_ARATH; NAC domain-containing protein 26
TrEMBL	V4KH04	0.0	V4KH04_EUTSA; Uncharacterized protein
STRING	XP_006391831.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2111	26	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62700.1	0.0	Arabidopsis NAC domain containing protein 26

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]