PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676732512
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 237aa    MW: 25323.5 Da    PI: 10.3106
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676732512genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.2e-073760225
               -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
               k ++C  f+ t  C++Gd+C+F H
  676732512 37 KSKPCTKFFSTSGCPFGDNCHFLH 60
               7789******************** PP
2zf-CCCH22.12.7e-07203228127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ykt+lC  fa+ G   yG+rC+FaHg+
  676732512 203 YKTKLCGKFAE-GNFTYGNRCHFAHGE 228
                9**********.888**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0843563IPR000571Zinc finger, CCCH-type
SMARTSM003560.0683562IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-63662IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-53760IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-83760IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.44E-14105181IPR004088K Homology domain, type 1
SMARTSM003227.7E-11111181IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.2E-15112181IPR004088K Homology domain, type 1
PROSITE profilePS5008414.487112176IPR004088K Homology domain, type 1
PfamPF000136.5E-11114176IPR004088K Homology domain, type 1
CDDcd001054.54E-13114172No hitNo description
Gene3DG3DSA:4.10.1000.101.8E-13197234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.108202229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6202232IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027202228IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-5203228IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDTRKRGPPE AGSANCNGRF KRSKHEMESN STGLGSKSKP CTKFFSTSGC PFGDNCHFLH  60
YVPGGYNAVA QMTNLGLPIA QSSRSMQISG GAGRFSGRRE PRAGPLSSFG ASATAKISVD  120
ASLVGAIIGK GGSHSKQICR QTGVKLSIQD DERDPNLKNI DLEGTFKQIN EASGIVRELI  180
AATARRPQGY RGSEGKPHPG SNYKTKLCGK FAEGNFTYGN RCHFAHGETE LRRPGIA
Cis-element ? help Back to Top
SourceLink
PlantRegMap676732512
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557941.11e-126PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1
RefseqXP_010557942.11e-126PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1
RefseqXP_010557944.11e-126PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1
RefseqXP_010557945.11e-126PREDICTED: zinc finger CCCH domain-containing protein 36-like isoform X1
SwissprotQ9FG301e-124C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLA0A087G5B31e-130A0A087G5B3_ARAAL; Uncharacterized protein
STRINGA0A087G5B31e-131(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-126C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]