PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676732614
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 295aa    MW: 33155.3 Da    PI: 6.556
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676732614genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3107.56.5e-3450162199
                EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                f+k ltpsdv+k++rlv+pk++ae++              ++++e+++ l++edesg+ W+++++y+++s++yvltkGW++Fvk+++L+ gD+v F++++
  676732614  50 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnaisnnadtssSSSSEKGMLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRQR 149
                99********************************999999777789***************************************************998 PP

                SSEE..EEEEE-S CS
         B3  87 rsefelvvkvfrk 99 
                +++++l+++++r+
  676732614 150 SDSRRLFIGWRRR 162
                89999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-4144169IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-3145162IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-2849153No hitNo description
SMARTSM010191.4E-2650163IPR003340B3 DNA binding domain
PROSITE profilePS5086314.18450163IPR003340B3 DNA binding domain
PfamPF023622.4E-3150162IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSVNHYSTDH HHHHHTLLWQ HLHTTDASET TTTATTAGTW LDEDQKESLF EKSLTPSDVG  60
KLNRLVIPKQ HAEKYFPLNA ISNNADTSSS SSSEKGMLLS FEDESGKCWR FRYSYWNSSQ  120
SYVLTKGWSR FVKDKQLDPG DVVFFQRQRS DSRRLFIGWR RRGQGSSSAV NPTSYSSSMT  180
APPYIQIHAS SNYSHPPSHS EYSHYAGAAV ATASETHSIP SSSAVGSSKT VRLFGVNLEC  240
QMDEDDGDDS VAAGVTTECP DGYYGQNMYY YYTPHPHNMM VDAVSRDETV EIRIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-50461624113B3 domain-containing transcription factor NGA1
5os9_B1e-50461624113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676732614
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0067001e-121AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
GenBankCP0026881e-121CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445235.11e-167PREDICTED: B3 domain-containing protein At5g06250 isoform X1
RefseqXP_018445236.11e-167PREDICTED: B3 domain-containing protein At5g06250 isoform X2
SwissprotQ9FNI31e-139Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A3N6RKG21e-167A0A3N6RKG2_BRACR; Uncharacterized protein
STRINGBo9g176470.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-119B3 family protein