PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676732636
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 229aa    MW: 25634.9 Da    PI: 8.2256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676732636genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-055476123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ Cg+ F++   L  H+++H
  676732636 54 YSCSFCGREFKSAQALGGHMNVH 76
               99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-65180No hitNo description
Gene3DG3DSA:3.30.160.602.4E-45278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00175476IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-65477IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.1545481IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MERGKCLMSM KLRPVVTRET SDAALLWPFG QDRAFAAVEE YGGGGGCMWP PRSYSCSFCG  60
REFKSAQALG GHMNVHRRDR ARLKQQSLSS SSTDQAAPLD YDHQQLQKQQ EVLDEGSKFP  120
VQEESRKSNG TKRDISDVDN INVLECSMKR FEHYNDEVKT ELSVGLLSSE FDPRKKQSIN  180
GFSSSKKAKT DVSRLPMMLG LVIGVSKING HHEELDLELR LGAHPSKVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-124976229superman protein
2l1o_A2e-124976229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269|PubMed:14681191}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676732636
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013728512.11e-147probable transcriptional regulator RABBIT EARS
SwissprotQ9LHS91e-129RBE_ARATH; Probable transcriptional regulator RABBIT EARS
TrEMBLA0A397XP141e-145A0A397XP14_BRACM; Uncharacterized protein
STRINGBra009160.1-P1e-145(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-132C2H2 family protein
Publications ? help Back to Top
  1. Li J, et al.
    RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis.
    J. Exp. Bot., 2016. 67(22): p. 6473-6480
    [PMID:27838638]