PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676733108
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 407aa    MW: 44748.3 Da    PI: 5.0319
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676733108genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.6e-16185232253
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                +  GVr++k +g+W+AeIr+p     + +r +lg+f+t+eeA++a+   rk++
  676733108 185 KPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTFDTEEEAHQAYKDKRKEY 232
                789*****9.**********72....36***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.04E-19184225No hitNo description
PROSITE profilePS5103216.66185242IPR001471AP2/ERF domain
PfamPF008472.0E-10185234IPR001471AP2/ERF domain
SMARTSM003801.4E-14185245IPR001471AP2/ERF domain
PRINTSPR003672.2E-6186197IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-14187232IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-18188226IPR001471AP2/ERF domain
PRINTSPR003672.2E-6208224IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MSAEFESTVI LSLINNISCP ISSSSSTTCL KSGLAAASSN ALVHFCSKQR LVLEVPSLSM  60
RLRPKRIWVV IATMVEIRKQ QCLSGKKKPK RSNSLLSQPQ ETQVLRKVRI FVSDPYATDD  120
SSSDEEEVRP RPVKRIVREI NFPPLESPAR AEPSESSSQD STKTVSKKAA AAAVLASSRP  180
RSSKKPVGVR QRKWGKWAAE IRHPITKTRT WLGTFDTEEE AHQAYKDKRK EYDALVGITK  240
TTKDSVSENA KTDVSSSETS QCSRSSPIEQ DTSASTPAPA LTSVKVKEDI KITTTTNDVP  300
IAAGIDSSKE VVFDFNFADL PIPDLGFFAE EGQMGDLGFF TEEGQIADLD CLFTDDQFDD  360
FGLLGFEDSG PSELPDCDFL DAEFDSSFPF LDQVPAQQHI PMKSFAA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676733108
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391127.11e-141ethylene-responsive transcription factor ERF118
SwissprotQ9CA271e-102EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLV4KM741e-140V4KM74_EUTSA; Uncharacterized protein
STRINGXP_006391127.11e-141(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-73ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]