PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676733470
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 443aa    MW: 51001.4 Da    PI: 8.65
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676733470genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.9e-08731126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               ykt+lC  + ++G C++ ++C+FaHg
  676733470  7 YKTKLCILYKKNGNCSR-PNCSFAHG 31
               9****************.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.19E-6436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-11538IPR000571Zinc finger, CCCH-type
SMARTSM003560.0077632IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.343633IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-6731IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MSGTSMYKTK LCILYKKNGN CSRPNCSFAH GTAELRRPGE PSSFTGRRHN LDSDLRNNLG  60
RQFSPEQRHS LDRNGGRRVQ RFSGHENHRL FEERRDEDYG ENRRYDERRD YAGGLNGKRI  120
EVGGKHERNK FLGYNNVLEE QLRDVQLDIN KLNDDKRRLE DCVERKAHEA EILTSKIQEL  180
KTHLDREKEE CKRITSNTKK FVKEYNRFLR AQNDLKRSQA RLQKLGAQLT TYLHGNEGND  240
RETDIDIVSD EEKNGRNLRT ASDSQNELQN TSSLSRKRHY VDQYTTSEHV EDALIGRGEE  300
DKVENMKRTS RSNMVPSKSF SGEESGGLDE DETINKSSSK EDNWKRRRFS SGTSSSYKKV  360
LGFKHKDNIL VTMLQVMSSA SMAARAFDKA AEIEEENPKR AKGSPLISLP PPPPLRDTHF  420
QGDEEDVDVD VIEKRKATDV DSV
Cis-element ? help Back to Top
SourceLink
PlantRegMap676733470
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406234.10.0zinc finger CCCH domain-containing protein 40
SwissprotQ93XW70.0C3H40_ARATH; Zinc finger CCCH domain-containing protein 40
TrEMBLV4LYT80.0V4LYT8_EUTSA; Uncharacterized protein
STRINGXP_006406234.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.10.0C3H family protein