PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676733542
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 357aa    MW: 40925.9 Da    PI: 8.0945
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676733542genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.4e-52101401128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....k 96 
                lppGfrFhPtdeel+ +yL+kkv++ +++l ++i++vdiyk++PwdLp+k+  +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + +      
  676733542  10 LPPGFRFHPTDEELILHYLRKKVSSLPVPL-SIIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVPngegF 108
                79****************************.89***************988899***************************************9955444 PP

        NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                +e++g+kk Lvfy+g+ pkg+kt+W+mheyrl
  676733542 109 HENIGIKKALVFYRGKPPKGVKTNWIMHEYRL 140
                455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-617186IPR003441NAC domain
PROSITE profilePS5100559.72910186IPR003441NAC domain
PfamPF023659.8E-2811140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSLPVPLS IIADVDIYKS DPWDLPAKAP  60
FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI AVPNGEGFHE NIGIKKALVF  120
YRGKPPKGVK TNWIMHEYRL AESLSPKRVG HSRSRSQVNN FGDRNLKSKE YSMRLDDWVL  180
CRIYKKSHAS LSSPDVASAI IDQEHEENDN EPFVVSETLL PDLANDQTLK RQKCSFSNLL  240
DATDLTFLTN FLNETPENRT ESEFSFTFGN FSNPDIYGNR YLDQKLPRLS SPTSETCVIG  300
NKRERVDFAE ETMNTSKKMT NNFSHNNSID HLDHSMVQQS SFLNQEFLMS PRLQYQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-69919016169NO APICAL MERISTEM PROTEIN
1ut4_B5e-69919016169NO APICAL MERISTEM PROTEIN
1ut7_A5e-69919016169NO APICAL MERISTEM PROTEIN
1ut7_B5e-69919016169NO APICAL MERISTEM PROTEIN
3swm_A5e-69919019172NAC domain-containing protein 19
3swm_B5e-69919019172NAC domain-containing protein 19
3swm_C5e-69919019172NAC domain-containing protein 19
3swm_D5e-69919019172NAC domain-containing protein 19
3swp_A5e-69919019172NAC domain-containing protein 19
3swp_B5e-69919019172NAC domain-containing protein 19
3swp_C5e-69919019172NAC domain-containing protein 19
3swp_D5e-69919019172NAC domain-containing protein 19
4dul_A5e-69919016169NAC domain-containing protein 19
4dul_B5e-69919016169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676733542
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747600.0KF974760.1 Brassica napus NAC transcription factor 47-1 (NAC47-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408226.10.0NAC transcription factor 47
SwissprotQ84TD60.0NAC47_ARATH; NAC transcription factor 47
TrEMBLV4M0Q70.0V4M0Q7_EUTSA; Uncharacterized protein
STRINGXP_006408226.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77232540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.10.0NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]