PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676733544
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 346aa    MW: 38773.4 Da    PI: 6.1284
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676733544genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.33.6e-54201461128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrFhPtdee++++yLk+kv + ++++  +i ++d++k ePwdLpk +k +eke yfF++rd+ky+tg r+nrat sgyWkatgkdke+++ kg lv
  676733544  20 LPPGFRFHPTDEEIITHYLKEKVFNVRFTA-AAIGQADLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATLSGYWKATGKDKEIFRGKGCLV 118
                79*************************999.78***************8888899***************************************9***** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                g+kktLvfy+grapkgekt+Wvmheyrl
  676733544 119 GMKKTLVFYRGRAPKGEKTNWVMHEYRL 146
                **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-6217172IPR003441NAC domain
PROSITE profilePS5100558.23420171IPR003441NAC domain
PfamPF023651.7E-2821146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MVEEVCVVVN QGGDQEAVDL PPGFRFHPTD EEIITHYLKE KVFNVRFTAA AIGQADLNKN  60
EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATLSGY WKATGKDKEI FRGKGCLVGM  120
KKTLVFYRGR APKGEKTNWV MHEYRLDGKY SYHNLPKSAR DEWVVCRVFH KNAPPPTTTT  180
ITTHTTNQLI RIESFDNIDH LLDFSSLPPL IDSGFLGQPG PSFSGASQQD DRKPILHHPT  240
TAPIDNTYIP AQTLSYPYNH SVQNSASCLG YGTGSGNNNN AMIKLEHSLV SVSQETGLSS  300
DVNTTATPEI SSYPMMMNSA ANAAMMDGNN TSYDDDDDLG IFWDDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-501817315167NO APICAL MERISTEM PROTEIN
1ut4_B4e-501817315167NO APICAL MERISTEM PROTEIN
1ut7_A4e-501817315167NO APICAL MERISTEM PROTEIN
1ut7_B4e-501817315167NO APICAL MERISTEM PROTEIN
3swm_A5e-501817318170NAC domain-containing protein 19
3swm_B5e-501817318170NAC domain-containing protein 19
3swm_C5e-501817318170NAC domain-containing protein 19
3swm_D5e-501817318170NAC domain-containing protein 19
3swp_A5e-501817318170NAC domain-containing protein 19
3swp_B5e-501817318170NAC domain-containing protein 19
3swp_C5e-501817318170NAC domain-containing protein 19
3swp_D5e-501817318170NAC domain-containing protein 19
4dul_A4e-501817315167NAC domain-containing protein 19
4dul_B4e-501817315167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676733544
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3616230.0AF361623.1 Arabidopsis thaliana AT3g04060/T11I18_17 mRNA, complete cds.
GenBankAY0818340.0AY081834.1 Arabidopsis thaliana AT3g04060/T11I18_17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187056.10.0NAC domain containing protein 46
SwissprotQ9SQQ60.0NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A1J3CDP60.0A0A1J3CDP6_NOCCA; Uncharacterized protein
STRINGAT3G04060.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.10.0NAC domain containing protein 46
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]