PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676733872
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family LBD
Protein Properties Length: 246aa    MW: 26890.8 Da    PI: 7.9415
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676733872genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.62.6e-304106198
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C+++C ++p++     +++q++++ +++k++G++ +++ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg++++++++l+q+++e++
  676733872   4 SCNGCRVLRKGCSENCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLLNAGPDHLRPAIFRSLLYEACGRILNPIYGSVGLLWSGNWHLCQAAVEAV 103
                6*********************9999777889*****************************************************************998 PP

     DUF260  96 llk 98 
                +++
  676733872 104 MRG 106
                766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.033109IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-244104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNAGPDH  60
LRPAIFRSLL YEACGRILNP IYGSVGLLWS GNWHLCQAAV EAVMRGSPVT PIACDVAVTG  120
QAPPFNNNKH FDIRHVSRDE NAVKSRCRSS RGACKEGRNV RSSLSHESSL SHESAVVKDE  180
GSMVSSEETT TEEPSWLGLE LTLGLEPPMA RGGHVVVPIK KRKLERCGTC DDEDTCKIEL  240
GLVCSE
Cis-element ? help Back to Top
SourceLink
PlantRegMap676733872
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738701e-128AB473870.1 Arabidopsis thaliana ASL37 mRNA for ASYMMETRIC LEAVES2-like 37 protein, complete cds.
GenBankAK2296501e-128AK229650.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-73-A22.
GenBankBT0109431e-128BT010943.1 Arabidopsis thaliana At1g67100 gene, complete cds.
GenBankBT0116501e-128BT011650.1 Arabidopsis thaliana At1g67100 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391473.11e-158LOB domain-containing protein 40
SwissprotQ9ZW961e-130LBD40_ARATH; LOB domain-containing protein 40
TrEMBLV4KCC31e-157V4KCC3_EUTSA; Uncharacterized protein
STRINGXP_006391473.11e-158(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152481518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-122LOB domain-containing protein 40