PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676734256

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

C2H2

Protein Properties

Length: 230aa MW: 25109 Da PI: 11.2334

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676734256	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	203	225	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+k+F++ L++H + H 676734256 203 PCGSCKKTFNSEGALESHTKAkH 225 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.536	202	230	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	204	225	IPR007087	Zinc finger, C2H2
Pfam	PF12874	1.1E-4	204	224	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MSCHACTLRC RAGHDTQQRL GHQGRLGMVV FSFPRCRGRD HPSYAYLRCR AGQRPQSISS 60 CPRCQAGRRS LSSMIKGLPS RTRMRKGDDR LGMDSLSKIM PSRMGARKGH GWLCPFSSPK 120 CFRAGHKLYD VSRKRCEAET RKKRAHEAAP KTPVSAKKAK TEVTPKKTEE KKKGGPATPH 180 PAKKGGKTPT AATPTPKSAG QVPCGSCKKT FNSEGALESH TKAKHSATAN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676734256

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2027	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	1e-08	histone deacetylase 3